Job Description P0A855 Confidence 99.48% Date Thu Jan 5 11:06:56 GMT 2012 Rank 93 Aligned Residues 232 % Identity 11% Template c4a11B_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:dna excision repair protein ercc-8; PDBTitle: structure of the hsddb1-hscsa complex Resolution 3.31 Å

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		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240															.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																								.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	G	Y	N	Q	F	V	V	H	R	S	P	Q	P	L	M	S	P	A	W	S	P	.	D	G	S	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G	A	V	R	Q	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	F	P	R	H	N	G	A	P	A	F	S
Query Conservation																								.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.													.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.
Template Sequence		L	N	K	D	R	D	V	E	R	I	H	G	G	G	I	N	T	L	D	I	E	P	V	E	G	R	Y	M	L	S	G	G	S	D	G	.	.	.	V	I	V	L	Y	D	L	E	N	S	S	R	Q	S	Y	Y	T	C	K	A	V	C	S	I	G	R	D	H	P	D	V	H	R	Y	S	V	E	T	V	Q	W	Y
Template Known Secondary structure				T	T								S	S									T	T	T									T	T	S	.	.	.											S	S	S	S												T	T		T	T			S	S
Template Predicted Secondary structure																																					.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.				.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	D	G	S	K	L	A	F	A	L	S	K	T	G	S	L	N	L	Y	V	M	D	L	A	S	G	Q	I	R	Q	V	T	D	G	R	S	N	N	T	E	P	T	W	F	P	D	S	Q	N	L	A	F	T	S	D	Q	A	G	R	P	Q	V	Y	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	H	D	T	G	M	F	T	S	S	S	F	D	K	T	L	K	V	W	D	T	N	T	L	Q	T	A	D	V	F	N	F	E	E	T	V	Y	S	H	H	M	S	P	V	S	T	K	H	C	L	V	A	V	G	T	R	G	P	K	V	Q	L	C	D	L	K	S	G	S	C	S	H	I	L	Q	G	H	R	Q	E
Template Known Secondary structure		T	T		T	T							T	T	S							T	T	T	T									S	S									S	S		S	S									S	S	S	S						S	S	S	S											S
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
																																												317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	N	I	N	G	G	A	P	Q	R	I	T	W	E	G	S	Q	N	Q	D	A	D	V	S	S	D	G	K	F	M	V	M	V	S	S	N	G	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	L	A	V	S	W	S	P	R	Y	D	Y	I	L	A	T	A	S	A	D	S	R	V	K	L	W	D	V	R	R	A	S	G	C	L	I	T	L	D	Q	H	N	G	K	K	S	Q	A	V	E	S	A	N	T	A	H	N	G	K	V	N	G	L	C	F	T	S	D	G	L	H	L	L	T	V	G	T	D	N	R
Template Known Secondary structure									S	S		T	T							T	T	S							T	T		S	S			S					T	T	T	T		S				T	T	T	S	S		S		S	S									T	T	S	S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.								.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.		.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.																																				.
Query SS confidence																			.	.	.	.	.	.	.																																				.
Query Sequence		Q	Q	H	I	A	K	Q	D	L	A	T	G	G	V	Q	V	L	.	.	.	.	.	.	.	S	S	T	F	L	D	E	T	P	S	L	A	P	N	G	T	M	V	I	Y	S	S	S	Q	G	M	G	S	V	L	N	L	V	S	T	.	D	G	R	F	K	A	R	L	P	A	T	D	G	Q	V	K	F	P	A	W
Query Conservation																			.	.	.	.	.	.	.																																				.
Alig confidence		.	.	.															.	.	.	.	.	.	.																										.	.	.								.
Template Conservation		.	.	.																																															.	.	.
Template Sequence		.	.	.	M	R	L	W	N	S	S	N	G	E	N	T	L	V	N	Y	G	K	V	C	N	N	S	K	K	G	L	K	F	T	V	S	C	G	C	S	S	E	F	V	F	V	P	Y	G	S	.	.	.	T	I	A	V	Y	T	V	Y	S	G	E	Q	I	T	M	L	K	G	H	Y	K	T	V	D	C	C	V	F
Template Known Secondary structure		.	.	.						T	T	T			B													S	S									S	S	S	S								T	T	.	.	.							T	T	T											S	S
Template Predicted Secondary structure		.	.	.																																															.	.	.
Template SS confidence
					269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.				.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		427	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	S
Template Known Secondary structure			T
Template Predicted Secondary structure
Template SS confidence
		343	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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