Job Description P0A855 Confidence 95.48% Date Thu Jan 5 11:06:56 GMT 2012 Rank 165 Aligned Residues 221 % Identity 12% Template c3s94A_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:low-density lipoprotein receptor-related protein 6; PDBTitle: crystal structure of lrp6-e1e2 Resolution 2.80 Å

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		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Y	E	L	R	V	S	D	Y	D	G	Y	N	Q	F	V	V	H	R	S	P	Q	P	L	M	S	P	A	W	S	P	D	G	S	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G	A	V	R	Q	V	A	S	F	P	R	H	N	G	A	P	A	F	S	P	D	G	S	K	L
Query Conservation
Alig confidence																.	.	.	.	.	.	.																								.	.										.	.	.
Template Conservation																.	.	.	.	.	.	.																								.	.										.	.	.
Template Sequence		R	R	D	L	R	L	V	D	A	T	V	G	G	L	.	.	.	.	.	.	.	E	D	A	A	A	V	D	F	V	F	S	H	G	L	I	Y	W	S	D	V	S	E	E	.	.	A	I	K	R	T	E	F	V	Q	.	.	.	N	V	V	V	S	G	L	L	S	P	D	G	L	A	C	D	W	L	G	E	K	L
Template Known Secondary structure		S	S	B									B			.	.	.	.	.	.	.	S									T	T	T	T							T	T	T	T	.	.										.	.	.					S	S		S									T	T	T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.																								.	.										.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.								.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.			.	.	.	.	.	70	.	.	.				.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		A	F	A	L	S	K	T	G	S	L	N	L	Y	V	M	D	L	A	S	G	Q	I	R	Q	V	T	D	G	R	.	S	N	N	T	E	P	T	W	F	P	D	S	Q	N	L	A	F	T	S	D	Q	A	G	R	P	Q	V	Y	K	V	N	I	N	G	G	A	P	Q	R	I	T	W	E	G	S	Q	N	Q	D	A
Query Conservation																															.
Alig confidence				.	.																										.
Template Conservation				.	.
Template Sequence		Y	W	.	.	T	D	S	E	T	N	R	I	E	V	S	N	L	D	G	S	L	R	K	V	L	F	W	Q	E	L	D	Q	P	R	A	I	A	L	D	P	S	S	G	F	M	Y	W	T	D	W	G	E	V	P	K	I	E	R	A	G	M	D	G	S	S	R	F	I	I	I	N	S	E	I	Y	W	P	N	G	L
Template Known Secondary structure				.	.			T	T	T	T							T	T	S		S							S	S		S									T	T	T	T								S	S	S								T	T	S		S							S	S		S	S
Template Predicted Secondary structure				.	.
Template SS confidence
		110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	S	S	D	G	K	F	M	V	M	V	S	S	N	G	G	Q	Q	H	I	A	K	Q	D	L	A	T	G	G	V	Q	V	L	S	S	T	F	L	D	E	T	P	S	L	A	P	N	G	T	M	V	I	Y	S	S	S	Q	G	M	G	S	V	L	N	L	V	S	T	D	G	R	F	K	A	R	L	P
Query Conservation
Alig confidence																			.	.
Template Conservation																			.	.
Template Sequence		T	L	D	Y	E	E	Q	K	L	Y	W	A	D	A	K	L	N	.	.	F	I	H	K	S	N	L	D	G	T	N	R	Q	P	F	A	L	T	L	F	E	D	I	L	Y	W	T	D	W	S	T	H	S	I	L	A	C	N	K	Y	T	G	E	G	L	R	E	I	H	S	D	I	F	S	P	M	D	I	H
Template Known Secondary structure					T	T	T	T							T	T	T		.	.						S	S	S												S	S	S							T	T	T		S						S	S	S									S						S
Template Predicted Secondary structure																			.	.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.			.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions