Job Description P0A855 Confidence 98.34% Date Thu Jan 5 11:06:56 GMT 2012 Rank 146 Aligned Residues 227 % Identity 9% Template c3s8vA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:low-density lipoprotein receptor-related protein 6; PDBTitle: crystal structure of lrp6-dkk1 complex Resolution 3.10 Å

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		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.			200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																							.	.																																													.
Query SS confidence																							.	.																																													.
Query Sequence		P	Y	E	L	R	V	S	D	Y	D	G	Y	N	Q	F	V	V	H	R	S	P	.	.	Q	P	L	M	S	P	A	W	S	P	D	G	S	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G	A	V	R	Q	V	A	S	F	P	.	R	H	N	G	A	P	A	F	S	P	D	G
Query Conservation																							.	.																																													.
Alig confidence																							.	.																			.	.																									.
Template Conservation																																											.	.
Template Sequence		R	A	D	I	R	R	I	S	L	E	T	N	N	N	N	V	A	I	P	L	T	G	V	K	E	A	S	A	L	D	F	D	V	T	D	N	R	I	Y	W	T	.	.	D	I	S	L	K	T	I	S	R	A	F	M	N	G	S	A	L	E	H	V	V	E	F	G	L	D	Y	P	E	G	M	A	V	D	W	L	G
Template Known Secondary structure		B	S							S	S	T	T									S	S		S	S								T	T	T	T						.	.		T	T	T	T							T	T	S		S							S	S		S									T	T	T
Template Predicted Secondary structure																																											.	.
Template SS confidence
		639	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.			680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	L	A	F	A	L	S	K	T	G	S	L	N	L	Y	V	M	D	L	A	S	G	Q	I	R	Q	V	T	D	G	R	S	N	N	T	E	P	T	W	F	P	D	S	Q	N	L	A	F	T	S	D	Q	A	G	R	P	Q	V	Y	K	V	N	I	N	G	G	A	P	Q	R	I	T	W	E	G	S	Q	N	Q
Query Conservation
Alig confidence							.	.
Template Conservation							.	.
Template Sequence		K	N	L	Y	W	.	.	A	D	T	G	T	N	R	I	E	V	S	K	L	D	G	Q	H	R	Q	V	L	V	W	K	D	L	D	S	P	R	A	L	A	L	D	P	A	E	G	F	M	Y	W	T	E	W	G	G	K	P	K	I	D	R	A	A	M	D	G	S	E	R	T	T	L	V	P	N	V	G	R	A	N
Template Known Secondary structure		T					.	.			T	T	T	T							T	T	S		S							T	T											T	T	T	T								S	S	S								T	T	S		S							S		S		B
Template Predicted Secondary structure							.	.
Template SS confidence
		717	.	.	720	.			.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	D	V	S	S	D	G	K	F	M	V	M	V	S	S	N	G	G	Q	Q	H	I	A	K	Q	D	L	A	T	G	G	V	Q	V	L	S	S	T	F	L	D	E	T	P	S	L	A	P	N	G	T	M	V	I	Y	S	S	S	Q	G	M	G	S	V	L	N	L	V	S	T	D	G	R	F	K	A	R	L
Query Conservation
Alig confidence																					.	.																																									.	.	.
Template Conservation																					.	.																																									.	.	.
Template Sequence		G	L	T	I	D	Y	A	K	R	R	L	Y	W	T	D	L	D	T	N	.	.	L	I	E	S	S	N	M	L	G	L	N	R	E	V	I	A	D	D	L	P	H	P	F	G	L	T	Q	Y	Q	D	Y	I	Y	W	T	D	W	S	R	R	.	.	.	S	I	E	R	A	N	K	T	S	G	Q	N	R	T	I
Template Known Secondary structure							T	T	T	T							T	T	T	T	.	.							T	T	S		S									S	S								S	S							T	T	T	T	.	.	.							T	T	T	S		S
Template Predicted Secondary structure																					.	.																																									.	.	.
Template SS confidence
		795	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.			.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.				.	.	.	.	.	.	860	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions