Job Description P0A855 Confidence 99.54% Date Thu Jan 5 11:06:56 GMT 2012 Rank 87 Aligned Residues 247 % Identity 10% Template c3mmyE_ PDB info PDB header:nuclear protein Chain: E: PDB Molecule:mrna export factor; PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1 Resolution 1.65 Å

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		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.				.	.	.	200	.	.	.	.	.	.	.	.	.	210				.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.				.	.	.	.	240	.	.	.
Predicted Secondary structure																										.	.	.															.	.	.																										.	.	.
Query SS confidence																										.	.	.															.	.	.																										.	.	.
Query Sequence		T	N	G	G	Q	F	P	Y	E	L	R	V	S	D	Y	D	G	Y	N	Q	F	V	V	H	.	.	.	R	S	P	Q	P	L	M	S	P	A	W	S	P	D	.	.	.	G	S	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G	A	.	.	.	V	R	Q	V	A	S	F	P
Query Conservation																										.	.	.															.	.	.																										.	.	.
Alig confidence																										.	.	.															.	.	.												.	.	.												.	.	.
Template Conservation																																																									.	.	.
Template Sequence		T	T	S	G	F	G	T	S	G	T	S	M	F	T	D	N	H	N	P	M	K	D	I	E	V	T	S	S	P	D	D	S	I	G	C	L	S	F	S	P	P	T	L	P	G	N	F	L	I	A	G	S	W	A	N	.	.	.	D	V	R	C	W	E	V	Q	D	S	G	Q	T	I	P	K	A	Q	Q	M	H	T
Template Known Secondary structure			S	S													S	S		T	T						S	S			S	S										T	T	S	S	S								T	T	S	.	.	.									T	T	S											S
Template Predicted Secondary structure																																																									.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60				.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	H	N	G	A	P	A	F	S	P	D	G	S	K	L	A	F	A	L	S	K	T	G	S	L	N	L	Y	V	M	D	L	A	S	G	Q	I	R	Q	V	T	D	G	R	S	N	N	T	E	P	T	W	F	P	D	S	Q	N	L	A	F	T	S	D	Q	A	G	R	P	Q	V	Y	K	V	N	I	N	G	G	A
Query Conservation
Alig confidence																								.	.	.
Template Conservation																								.	.	.
Template Sequence		G	P	V	L	D	V	C	W	S	D	D	G	S	K	V	F	T	A	S	C	D	K	.	.	.	T	A	K	M	W	D	L	S	S	N	Q	A	I	Q	I	A	Q	H	D	A	P	V	K	T	I	H	W	I	K	A	P	N	Y	S	C	V	M	T	G	S	W	D	K	T	L	K	F	W	D	T	R	S	S	N	P
Template Known Secondary structure		S									T	T	S	S							T	T	S	.	.	.							T	T	T	T									S	S											S	S									T	T	S							S	S		S	S
Template Predicted Secondary structure																								.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.				.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.																																																								.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	Q	R	I	T	W	E	G	S	Q	N	Q	D	A	D	V	S	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	F	M	V	M
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	M	V	L	Q	L	P	E	R	C	Y	C	A	D	V	I	Y	P	M	A	V	V	A	T	A	E	R	G	L	I	V	Y	Q	L	E	N	Q	P	S	E	F	R	R	I	E	S	P	L	K	H	Q	H	R	C	V	A	I	F	K	D	K	Q	N	K	P	T	G	F	A	L	G	S	I	E	G	R	V	A	I	H
Template Known Secondary structure		S						S	S									T	T							G	G	G								S	S	S										S		S	S											T	T	S										S	S	S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.		.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		V	S	S	N	G	G	Q	Q	H	I	A	K	Q	D	L	A	T	G	G	V	Q	V	L	S	S	T	F	L	D	E	T	P	S	L	A	P	N	G	T	M	V	I	Y	S	S	S	Q	G	M	G	S	V	L	N	L	V	S	T	.	D	G	R	F	K	A	R	L	P	A	T	D	G	Q	V	K	F	P	A	W	S
Query Conservation																																																												.
Alig confidence																																																		.	.	.								.
Template Conservation																																																		.	.	.
Template Sequence		Y	I	N	P	P	N	P	A	K	D	N	F	T	F	K	C	H	R	S	N	S	A	P	Q	D	I	Y	A	V	N	G	I	A	F	H	P	V	H	G	T	L	A	T	V	G	S	D	G	.	.	.	R	F	S	F	W	D	K	D	A	R	T	K	L	K	T	S	E	Q	L	D	Q	P	I	S	A	C	C	F	N
Template Known Secondary structure			S	S		S						S						S																			T	T	T								T	T	S	.	.	.							T	T	T	T										S	S
Template Predicted Secondary structure																																																		.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.				.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		428
Predicted Secondary structure
Query SS confidence
Query Sequence		P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		325

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions