Job Description P0A855 Confidence 99.82% Date Thu Jan 5 11:06:56 GMT 2012 Rank 33 Aligned Residues 253 % Identity 11% Template c3mkqA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:coatomer beta'-subunit; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat Resolution 2.50 Å

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		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.
Predicted Secondary structure																											.																																																.
Query SS confidence																											.																																																.
Query Sequence		R	T	R	I	A	Y	V	V	Q	T	N	G	G	Q	F	P	Y	E	L	R	V	S	D	Y	D	.	G	Y	N	Q	F	V	V	H	R	S	P	Q	P	L	M	S	P	A	W	S	P	D	G	S	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G	A	.	V	R	Q	V	A	S
Query Conservation																											.																																																.
Alig confidence														.	.	.	.	.									.																																		.	.	.												.
Template Conservation														.	.	.	.	.																																											.	.	.
Template Sequence		T	E	P	W	V	L	T	T	L	Y	S	G	.	.	.	.	.	R	V	E	I	W	N	Y	E	T	Q	V	E	V	R	S	I	Q	V	T	E	T	P	V	R	A	G	K	F	I	A	R	K	N	W	I	I	V	G	S	D	D	F	.	.	.	R	I	R	V	F	N	Y	N	T	G	E	K	V	V	D	F	E	A
Template Known Secondary structure		S	S	S							T	T	S	.	.	.	.	.							T	T	T	T										S	S									G	G	G	T							T	T	S	.	.	.							T	T	T
Template Predicted Secondary structure														.	.	.	.	.																																											.	.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.						.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.				.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	P	R	H	N	G	A	P	A	F	S	P	D	G	S	K	L	A	F	A	L	S	K	T	G	S	L	N	L	Y	V	M	D	L	A	S	G	Q	I	R	Q	V	T	D	G	R	S	N	N	T	E	P	T	W	F	P	D	S	Q	N	L	A	F	T	S	D	Q	A	G	R	P	Q	V	Y	K	V	N	I	N	G
Query Conservation
Alig confidence																				.
Template Conservation																				.
Template Sequence		H	P	D	Y	I	R	S	I	A	V	H	P	T	K	P	Y	V	L	.	S	G	S	D	D	L	T	V	K	L	W	N	W	E	N	N	W	A	L	E	Q	T	F	E	G	H	E	H	F	V	M	C	V	A	F	N	P	K	D	P	S	T	F	A	S	G	C	L	D	R	T	V	K	V	W	S	L	G	Q	S	T
Template Known Secondary structure			S	S									S	S	S	S				.				T	T	S							G	G	G	T	S										S	S									T	T										T	T	S							T	T		S	S
Template Predicted Secondary structure																				.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.		.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		G	A	P	Q	R	I	T	W	E	G	S	Q	N	Q	D	A	D	V	S	S	D	.	G	K	F	M	V	M	V	S	S	N	G	G	Q	Q	H	I	A	K	Q	D	L	A	T	G	G	V	Q	V	L	S	S	T	F	L	D	E	T	P	S	L	A	P	N	G	T	M	V	I	Y	S	S	S	Q	G	M	G	S	V
Query Conservation																							.
Alig confidence																							.																																																							.	.	.
Template Conservation																																																																														.	.	.
Template Sequence		P	N	F	T	L	T	T	G	Q	E	R	G	V	N	Y	V	D	Y	Y	P	L	P	D	K	P	Y	M	I	T	A	S	D	D	L	T	I	K	I	W	D	Y	Q	T	K	S	C	V	A	T	L	E	G	H	M	S	N	V	S	F	A	V	F	H	P	T	L	P	I	I	I	S	G	S	E	D	G	.	.	.	T
Template Known Secondary structure			S								T	T										S	T	T									T	T	S							T	T	T	T										S	S									S	S	S	S							T	T	S	.	.	.
Template Predicted Secondary structure																																																																														.	.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250				.
		401	.	.	.	.	.		.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		L	N	L	V	S	T	.	D	G	R	F	K	A	R	L	P	A	T	D	G	Q	V	K	F	P	A	W	S	P
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence		L	K	I	W	N	S	S	T	Y	K	V	E	K	T	L	N	V	G	L	E	R	S	W	C	I	A	T	H	P
Template Known Secondary structure							T	T	T		S								S	S	S	S								T
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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