Job Description P0A855 Confidence 99.61% Date Thu Jan 5 11:06:56 GMT 2012 Rank 74 Aligned Residues 236 % Identity 13% Template c3lrvA_ PDB info PDB header:splicing Chain: A: PDB Molecule:pre-mrna-splicing factor 19; PDBTitle: the prp19 wd40 domain contains a conserved protein interaction region2 essential for its function. Resolution 2.60 Å

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		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.					.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																										.											.	.	.	.																																									.
Query SS confidence																										.											.	.	.	.																																									.
Query Sequence		F	R	T	R	I	A	Y	V	V	Q	T	N	G	G	Q	F	P	Y	E	L	R	V	S	D	.	Y	D	G	Y	N	Q	F	V	V	H	.	.	.	.	R	S	P	Q	P	L	M	S	P	A	W	S	P	D	G	S	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G	A	V	.
Query Conservation																										.											.	.	.	.																																									.
Alig confidence															.	.	.	.	.							.											.	.	.	.																										.	.	.													.
Template Conservation															.	.	.	.	.																																															.	.	.
Template Sequence		Y	D	K	W	V	C	M	C	R	C	E	D	G	.	.	.	.	.	A	L	H	F	T	Q	L	K	D	S	K	T	I	T	T	I	T	T	P	N	P	R	T	G	G	E	H	P	A	I	I	S	R	G	P	C	N	R	L	L	L	L	Y	P	G	N	.	.	.	Q	I	T	I	L	D	S	K	T	N	K	V	L
Template Known Secondary structure													T	T	.	.	.	.	.								S	S	S	S												T	T					S						S	T	T							T	T	T	.	.	.							T	T	T
Template Predicted Secondary structure															.	.	.	.	.																																															.	.	.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.						.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.				.	.	.	.	.	270	.	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	V	A	S	F	P	R	H	N	G	A	P	A	F	S	P	D	G	S	K	L	A	F	A	L	S	K	T	G	S	L	N	L	Y	V	M	D	L	A	S	G	Q	I	R	Q	V	T	D	G	R	S	N	N	T	E	P	T	W	F	P	D	S	Q	N	L	A	F	T	S	D	Q	A	G	R	P	Q	V	Y	K
Query Conservation
Alig confidence																									.
Template Conservation																									.
Template Sequence		R	E	I	E	V	D	S	A	N	E	I	I	Y	M	Y	G	H	N	T	E	Y	F	I	.	W	A	D	N	R	G	T	I	G	F	Q	S	Y	E	D	D	S	Q	Y	I	V	H	S	A	K	S	D	V	E	Y	S	S	G	V	L	H	K	D	S	L	L	L	A	L	Y	S	P	D	G	I	L	D	V	Y	N	L
Template Known Secondary structure									S	S															.				T	T								S	S	S	S										S	S										T	T	S								T	T	S							S
Template Predicted Secondary structure																									.
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	I	N	G	G	A	P	Q	R	I	T	W	E	G	S	Q	N	Q	D	A	D	V	S	S	D	G	K	F	M	V	M	V	S	S	N	G	G	Q	Q	H	I	A	K	Q	D	L	A	T	G	G	V	Q	V	L	S	S	T	F	L	D	E	T	P	S	L	A	P	N	G	T	M	V	I	Y	S	S	S	Q	G
Query Conservation
Alig confidence																																				.	.
Template Conservation																																				.	.
Template Sequence		S	S	P	D	Q	A	S	S	R	F	P	V	D	E	E	A	K	I	K	E	V	K	F	A	D	N	G	Y	W	M	V	V	E	C	.	.	D	Q	T	V	V	C	F	D	L	R	K	D	V	G	T	L	A	Y	P	T	Y	T	I	G	T	V	T	Y	D	I	D	D	S	G	K	N	M	I	A	Y	S	N	E	S
Template Known Secondary structure		S		T	T	S									T	T	S									T	T	S	S							.	.	S	S	B						T	T	S	S	T	T		B	S	S				B										T	T	S	S							T	T	T
Template Predicted Secondary structure																																				.	.
Template SS confidence
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.			.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	G	S	V	L	N	L	V	S	T	D	G	R	F	K
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	N	S	L	T	I	Y	K	F	D	K	K	T	K
Template Known Secondary structure		.	.	T									T	T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				443	.	.	.	.	.	.	450	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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