Job Description P0A855 Confidence 99.81% Date Thu Jan 5 11:06:56 GMT 2012 Rank 35 Aligned Residues 223 % Identity 13% Template c3jroA_ PDB info PDB header:transport protein, structural protein Chain: A: PDB Molecule:fusion protein of protein transport protein sec13 PDBTitle: nup84-nup145c-sec13 edge element of the npc lattice Resolution 4.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.				.	.	.	.	.	.	.	.	250	.	.			.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure																																														.	.	.												.	.
Query SS confidence																																														.	.	.												.	.
Query Sequence		S	P	Q	P	L	M	S	P	A	W	S	P	D	G	S	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G	A	V	R	Q	V	A	S	.	.	.	F	P	R	H	N	G	A	P	A	F	S	.	.	P	D	G	S	K	L	A	F	A	L	S	K	T	G	S	L	N	L	Y	V
Query Conservation																																														.	.	.												.	.
Alig confidence																										.	.	.																		.	.	.												.	.								.
Template Conservation																										.	.	.																																									.
Template Sequence		H	N	E	L	I	H	D	A	V	L	D	Y	Y	G	K	R	L	A	T	C	S	S	D	K	.	.	.	T	I	K	I	F	E	V	E	G	E	T	H	K	L	I	D	T	L	T	G	H	E	G	P	V	W	R	V	D	W	A	H	P	K	F	G	T	I	L	A	.	S	C	S	Y	D	G	K	V	L	I	W	K
Template Known Secondary structure													S	S	S								T	T	T	.	.	.									T	T												S	S										T	T	S		S				.				T	T	S
Template Predicted Secondary structure																										.	.	.																																									.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.				.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.
		273	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.			.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.					.	.	.	.
Predicted Secondary structure							.																						.	.																																												.	.	.	.
Query SS confidence							.																						.	.																																												.	.	.	.
Query Sequence		M	D	L	A	S	.	G	Q	I	R	Q	V	T	D	G	R	S	N	N	T	E	P	T	W	F	P	D	.	.	S	Q	N	L	A	F	T	S	D	Q	A	G	R	P	Q	V	Y	K	V	N	I	N	G	G	A	P	Q	R	I	T	W	E	G	S	Q	N	Q	D	A	D	V	S	S	.	.	.	.	D	G	K	F
Query Conservation							.																						.	.																																												.	.	.	.
Alig confidence							.																						.	.																																												.	.	.	.
Template Conservation
Template Sequence		E	E	N	G	R	W	S	Q	I	A	V	H	A	V	H	S	A	S	V	N	S	V	Q	W	A	P	H	E	Y	G	P	L	L	L	V	A	S	S	D	G	K	V	S	V	V	E	F	K	E	N	G	T	T	S	P	I	I	I	D	A	H	A	I	G	V	N	S	A	S	W	A	P	A	T	T	K	E	S	R	K
Template Known Secondary structure				T	T												S	S										G	G	G		S							T	T	S									S	S	S											S	S													G	G	G
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.					.	.	.	.	.	.	.	.	380	.	.	.	.	.				.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410							.	.
Predicted Secondary structure																												.	.	.	.															.	.	.																										.	.	.	.	.	.
Query SS confidence																												.	.	.	.															.	.	.																										.	.	.	.	.	.
Query Sequence		M	V	M	V	S	S	N	G	G	Q	Q	H	I	A	K	Q	D	L	A	T	G	G	V	Q	V	L	.	.	.	.	S	S	T	F	L	D	E	T	P	S	L	A	P	N	.	.	.	G	T	M	V	I	Y	S	S	S	Q	G	M	G	S	V	L	N	L	V	S	T	D	G	R	F	.	.	.	.	.	.	K	A
Query Conservation																												.	.	.	.															.	.	.																										.	.	.	.	.	.
Alig confidence				.																								.	.	.	.															.	.	.												.	.	.												.	.	.	.	.	.
Template Conservation				.																																																								.	.	.
Template Sequence		F	V	.	T	G	G	A	D	N	L	V	K	I	W	K	Y	N	S	D	A	Q	T	Y	V	L	E	S	T	L	E	G	H	S	D	W	V	R	D	V	A	W	S	P	T	V	L	L	R	S	Y	L	A	S	V	S	Q	D	R	.	.	.	T	C	I	I	W	T	Q	D	N	E	Q	G	P	W	K	K	T	L	L
Template Known Secondary structure				.				T	T	S									T	T	T	T												S	S												S	S	S								S	S	S	.	.	.								S	S	S	S	S			B			B	S
Template Predicted Secondary structure				.																																																								.	.	.
Template SS confidence
		173	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.				230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	P	A	T	D	G	Q	V	K	F	P	A	W	S	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E	E	K	F	P	D	V	L	W	R	A	S	W	S	L
Template Known Secondary structure		S	S	S			S	S									T
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions