Job Description P0A855 Confidence 99.77% Date Thu Jan 5 11:06:56 GMT 2012 Rank 43 Aligned Residues 230 % Identity 13% Template c3iytG_ PDB info PDB header:apoptosis Chain: G: PDB Molecule:apoptotic protease-activating factor 1; PDBTitle: structure of an apoptosome-procaspase-9 card complex Resolution 9.50 Å

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		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.		.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence		Y	D	G	Y	N	Q	F	V	V	H	R	S	P	Q	P	L	M	S	P	A	W	S	P	D	G	S	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G	A	V	.	R	Q	V	A	S	F	P	R	H	N	G	A	P	A	F	S	P	D	G	S	K	L	A	F	A	L	S	K	T
Query Conservation																																																				.
Alig confidence																																					.	.	.													.																								.	.	.
Template Conservation																																					.	.	.																																					.	.	.
Template Sequence		V	D	N	G	M	L	Y	L	E	W	I	N	K	K	A	V	Y	H	A	C	F	S	E	D	G	Q	R	I	A	S	C	G	A	D	K	.	.	.	T	L	Q	V	F	K	A	E	T	G	E	K	L	L	E	I	K	A	H	E	D	E	V	L	C	C	A	F	S	T	D	D	R	F	I	A	.	.	.	T	C	S
Template Known Secondary structure				S			B																	S	S	S	S							T	T	S	.	.	.							T	T	T											S	S									S	S	S	S				.	.	.
Template Predicted Secondary structure																																					.	.	.																																					.	.	.
Template SS confidence
		588	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.				.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.				.	660	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		G	S	L	N	L	Y	V	M	D	L	A	S	G	Q	I	R	Q	V	T	D	G	.	R	S	N	N	T	E	P	T	W	F	P	D	S	Q	N	L	A	F	T	S	D	Q	A	G	R	P	Q	V	Y	K	V	N	I	N	G	G	A	P	Q	R	I	T	W	E	G	S	Q	N	Q	D	A	D	V	S	S	D	G	K
Query Conservation																							.
Alig confidence																							.
Template Conservation
Template Sequence		V	D	K	K	V	K	I	W	N	S	M	T	G	E	L	V	H	T	Y	D	E	H	S	E	Q	V	N	C	C	H	F	T	N	S	S	H	H	L	L	L	A	T	G	S	S	D	C	F	L	K	L	W	D	L	N	Q	K	E	C	R	N	T	M	F	G	H	T	N	S	V	N	H	C	R	F	S	P	D	D	K
Template Known Secondary structure		T	T								T	T	S	S										S	S									S	S	S	S	S	S							T	T	S							T	T	T											S	S									S	S	S
Template Predicted Secondary structure
Template SS confidence
		677	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	M	V	M	V	S	S	N	G	G	Q	Q	H	I	A	K	Q	D	L	A	T	G	G	V	Q	V	L	S	S	T	F	L	D	E	T	P	S	L	A	P	N	G	T	M	V	I	Y	S	S	S	Q	G	M	G	S	V	L	N	L	V	S	T	D	G	R	F	K	A	R	L	P	A	T	D	G	Q	V	K	F	P
Query Conservation
Alig confidence												.	.	.																																				.	.	.
Template Conservation												.	.	.																																				.	.	.
Template Sequence		L	L	A	S	C	S	A	D	G	T	.	.	.	L	K	L	W	D	A	T	S	A	N	E	R	K	S	I	N	V	K	Q	F	F	L	N	L	E	D	P	Q	E	R	I	M	V	A	A	.	.	.	K	N	K	I	F	L	F	D	I	H	T	S	G	L	L	G	E	I	H	T	G	H	H	S	T	I	Q	Y	C
Template Known Secondary structure								T	T	S		.	.	.						S	S	S											S	S																.	.	.	S	S							S	S	S	T	T										S	S
Template Predicted Secondary structure												.	.	.																																				.	.	.
Template SS confidence
		757	.	.	760	.	.	.	.	.	.				.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.				.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830
		425	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	S	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	F	S	P
Template Known Secondary structure					S
Template Predicted Secondary structure
Template SS confidence
		847	.	.	850

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions