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Job DescriptionP0A855
Confidence98.55%DateThu Jan 5 11:06:56 GMT 2012
Rank142Aligned Residues227
% Identity18%Templatec3hxjA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:pyrrolo-quinoline quinone; PDBTitle: crystal structure of pyrrolo-quinoline quinone (pqq_dh) from2 methanococcus maripaludis, northeast structural genomics consortium3 target mrr86
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   182.......190.........200.........210. ........220.........230
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Query Sequence  LRVSDYDGYNQFVVHRSPQPLMSPAWSPDG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SKLAYVTFESGRSALVIQT
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Template Sequence  LYAINTDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDKVYAINPDGTEKWRFDTSDFTIFEDILYVTSXDG. . . HLYAIN
Template Known Secondary structure  T
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   42.......50.........60.........70.........80.........90.........100.........110.. ......
 
   231........240.........250.........260.........270.........280.........290.........300.........310
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Query Sequence  LANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG
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Template Sequence  TDGTEKWRFKTKKAIYATPIVSEDGTIYVGSNDN. . . . YLYAINPDGTEKWRFKTNDAITSAASIGKDGTIYFGSD. . . .
Template Known Secondary structure  TTS

SS


S


TTS

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S


TT

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   124.....130.........140.........150....... ..160.........170.........180.........190.....
 
   311........320.........330.........340.........350.........360.........370.........380.........390
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Query Sequence  RPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVI
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Template Sequence  . . KVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDG. . . . HLYAINPDGTEKWRFKTGKRIESSPVIGNTDTIY
Template Known Secondary structure  ..S
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S


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   196...200.........210.........220.........230..... ....240.........250.........260.........
 
   391........400.........410.........420........
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Query Sequence  YSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP
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Template Sequence  FGSYDG. . . HLYAINPDGTEKWNFETGSWIIATPVIDE
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TT
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S


T
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   270..... ....280.........290.........300....
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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