Job Description P0A855 Confidence 99.40% Date Thu Jan 5 11:06:56 GMT 2012 Rank 110 Aligned Residues 233 % Identity 15% Template c3greA_ PDB info PDB header:signaling protein,protein binding Chain: A: PDB Molecule:serine/threonine-protein kinase vps15; PDBTitle: crystal structure of saccharomyces cerevisiae vps15 wd2 repeat domain Resolution 1.80 Å

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		185	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.							.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																.															.																														.	.	.	.	.	.
Query SS confidence																.															.																														.	.	.	.	.	.
Query Sequence		S	D	Y	D	G	Y	N	Q	F	V	V	H	R	S	.	P	Q	P	L	M	S	P	A	W	S	P	D	G	S	.	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G	A	V	R	Q	V	A	S	.	.	.	.	.	.	F	P	R	H	N	G	A	P	A	F	S	P	D	G	S
Query Conservation																.															.																														.	.	.	.	.	.
Alig confidence																.															.										.	.	.																		.	.	.	.	.	.
Template Conservation																																									.	.	.
Template Sequence		G	N	L	R	G	K	L	I	A	T	L	M	E	N	E	P	N	S	I	T	S	S	A	V	S	P	G	E	T	P	Y	L	I	T	G	S	D	Q	G	.	.	.	V	I	K	I	W	N	L	K	E	I	I	V	G	E	V	Y	S	S	S	L	T	Y	D	C	S	S	T	V	T	Q	I	T	M	I	P	N	F	D
Template Known Secondary structure		G	G											T	T	T	T	S										S	S	S								T	T	S	.	.	.												T	T				S		S						S	S									T	T	S	S
Template Predicted Secondary structure																																									.	.	.
Template SS confidence
		1065	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.				.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.																			.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	L	A	F	A	L	S	K	T	G	S	L	N	L	Y	V	M	D	L	A	S	G	Q	I	R	Q	V	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	S	N	N	T	E	P	T	W	F	P	D	S	Q	N	L	A	F	T	S	D	Q	A	G	R	P	Q	V	Y	K	V	N
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.
Template Sequence		A	F	A	V	S	S	K	D	G	.	.	.	Q	I	I	V	L	K	V	N	H	Y	Q	Q	E	S	E	V	K	F	L	N	C	E	C	I	R	K	I	N	L	K	N	F	G	K	N	E	Y	A	V	R	M	R	A	F	V	N	E	E	K	S	L	L	V	A	L	T	N	L	S	R	V	I	I	F	D	I	R	T
Template Known Secondary structure								T	T	S	.	.	.													T	T															G	G	G	G	S	S													S	S									T	T	S							T	T	T
Template Predicted Secondary structure											.	.	.
Template SS confidence
		1142	.	.	.	.	.	.	.	1150				.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.								.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.
Query Sequence		I	N	G	G	A	P	Q	R	I	T	W	E	G	S	Q	N	Q	D	A	D	V	S	S	D	G	K	F	M	V	M	V	S	S	N	G	G	Q	Q	H	I	A	K	Q	D	L	A	T	G	G	V	Q	V	L	S	S	T	F	L	D	E	T	P	S	.	.	.	.	.	.	.	L	A	P	N	G	T	M	V	I	Y
Query Conservation																																																																	.	.	.	.	.	.	.
Alig confidence																																						.	.	.																									.	.	.	.	.	.	.
Template Conservation																																						.	.	.
Template Sequence		L	E	R	L	Q	I	I	E	N	S	P	R	H	G	A	V	S	S	I	C	I	D	E	E	C	C	V	L	I	L	G	T	T	R	G	I	.	.	.	I	D	I	W	D	I	R	F	N	V	L	I	R	S	W	S	F	G	D	H	A	P	I	T	H	V	E	V	C	Q	F	Y	G	K	N	S	V	I	V	V	G
Template Known Secondary structure												G	G	G										T	T	S								T	T	S		.	.	.						T	T	T	T							B		T	T											T	T	T		T	T
Template Predicted Secondary structure																																						.	.	.
Template SS confidence
		1219	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.				.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.		.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		S	S	S	Q	G	M	G	S	V	L	N	L	V	S	T	.	D	G	R	F	K	A	R	L	P	A	T	D	G	Q	V	K	F	P	A	W	S	P	Y
Query Conservation																	.
Alig confidence							.	.	.								.
Template Conservation							.	.	.
Template Sequence		G	S	S	K	T	.	.	.	F	L	T	I	W	N	F	V	K	G	H	C	Q	Y	A	F	I	N	S	D	E	Q	P	S	M	E	H	F	L	P	I
Template Known Secondary structure			S	T	T		.	.	.							T	T	T	T								S	S	S	S				G	G	G	G	S		B
Template Predicted Secondary structure							.	.	.
Template SS confidence
		1296	.	.	.	1300				.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions