Job Description P0A855 Confidence 99.23% Date Thu Jan 5 11:06:56 GMT 2012 Rank 126 Aligned Residues 183 % Identity 16% Template c3fhcA_ PDB info PDB header:transport protein/hydrolase Chain: A: PDB Molecule:nuclear pore complex protein nup214; PDBTitle: crystal structure of human dbp5 in complex with nup214 Resolution 2.80 Å

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		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.																	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Query Sequence		P	A	W	S	P	D	G	S	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	V	R	Q	V	A	S	F	P	R	H	N	G	A	P	A	F	S	P	D	G	S	K	L	A	F	A	.	L	S	K	T	G	S
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Alig confidence																			.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Template Conservation																			.	.	.	.
Template Sequence		L	A	V	S	N	K	Y	G	L	V	F	A	G	G	A	S	G	.	.	.	.	L	Q	I	F	P	T	K	N	L	L	I	Q	N	K	P	G	D	D	P	N	K	I	V	D	K	V	Q	G	L	L	V	P	M	K	F	P	I	H	H	L	A	L	S	C	D	N	L	T	L	S	A	C	M	M	S	S	E	Y	G
Template Known Secondary structure						T	T	T	T						S	S	S		.	.	.	.															T	T			T	T														S	S									T	T	S										T	T	T
Template Predicted Secondary structure																			.	.	.	.
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.					.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	L	Y	V	M	D	L	A	S	G	Q	I	R	Q	V	T	D	G	R	S	N	N	T	E	P	T	W	F	P	D	S	Q	N	L	A	F	T	S	D	Q	A	G	R	P	Q	V	Y	K	V	N	I	N	G	G	A	P	Q	R	I	T	W	E	G	S	Q	N	Q	D	A	D	V	S	S	D	G	K	F	M	V
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	I	I	A	F	F	D	V	R	T	F	S	N	E	A	Q	K	R	P	F	A	Y	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	L	K	D	A	G	G	M	V	I	D	M	K	W	N	P	T	V	P	S	M	V
Template Known Secondary structure									G	G	G	G	G	S							S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S	G	G	G									S	S		T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140																																			.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.								.	.	.	.	.	420
Predicted Secondary structure																																																																					.	.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.	.
Query Sequence		M	V	S	S	N	G	G	Q	Q	H	I	A	K	Q	D	L	A	T	G	G	V	Q	V	L	S	S	T	F	L	D	E	T	P	S	L	A	P	N	G	T	M	V	I	Y	S	S	S	Q	G	M	G	S	V	L	N	L	V	S	T	D	G	R	F	K	A	R	L	.	.	.	.	.	.	.	P	A	T	D	G	Q
Query Conservation																																																																					.	.	.	.	.	.	.
Alig confidence																																																			.	.	.																.	.	.	.	.	.	.
Template Conservation																																																			.	.	.
Template Sequence		A	V	C	L	A	D	G	S	I	A	V	L	Q	V	T	E	T	V	K	V	C	A	T	L	P	S	T	V	A	V	T	S	V	C	W	S	P	K	G	K	Q	L	A	V	G	K	Q	N	G	.	.	.	T	V	V	Q	Y	L	P	T	L	Q	E	K	K	V	I	P	C	P	P	F	Y	E	S	D	H	P	V	R
Template Known Secondary structure						T	T	S								S	S	S									G	G	G									T	T	S	S	S						T	T	S	.	.	.							T	T											T	T	S		T	T	S
Template Predicted Secondary structure																																																			.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.				.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		421	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	F	P	A	W	S	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	D	V	L	W	I	G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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