Job Description P0A855 Confidence 99.38% Date Thu Jan 5 11:06:56 GMT 2012 Rank 114 Aligned Residues 209 % Identity 11% Template c3eweC_ PDB info PDB header:protein transport,structural protein Chain: C: PDB Molecule:nucleoporin seh1; PDBTitle: crystal structure of the nup85/seh1 complex Resolution 3.50 Å

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		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.						.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.
Query SS confidence																																				.	.	.	.	.
Query Sequence		L	M	S	P	A	W	S	P	D	G	S	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G	A	.	.	.	.	.	V	R	Q	V	A	S	F	P	R	H	N	G	A	P	A	F	S	P	D	G	S	K	L	A	F	A	L	S	K	T	G	S	L	N	L	Y	V	M	D	L	A
Query Conservation																																				.	.	.	.	.
Alig confidence																						.	.	.												.	.	.	.	.
Template Conservation																						.	.	.
Template Sequence		V	H	D	V	V	Y	D	F	Y	G	R	H	V	A	T	C	S	S	D	Q	.	.	.	H	I	K	V	F	K	L	D	K	D	T	S	N	W	E	L	S	D	S	W	R	A	H	D	S	S	I	V	A	I	D	W	A	S	P	E	Y	G	R	I	I	A	S	A	S	Y	D	K	T	V	K	L	W	E	E	W	N
Template Known Secondary structure					B				S	S	S	S							S	S	S	.	.	.									T	T	T													S	S										T	T	T									S	S	S
Template Predicted Secondary structure																						.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.				.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	G	Q	I	R	Q	V	T	D	G	R	S	N	N	T	E	P	T	W	F	P	D	S	Q	N	L	A	F	T	S	D	Q	A	G	R	P	Q	V	Y	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	L	C	T	L	N	D	S	K	G	S	L	Y	S	V	K	F	A	P	A	H	L	G	L	K	L	A	C	L	G	N	D	G	I	L	R	L	Y	D	A	L	E	P	S	D	L	R	S	W	T	L	T	S	E	M	K	V	S	D	F	C	L	S	W	C	P	S	P	E	K	L	A	V	S	A	L	E	Q	A	I
Template Known Secondary structure										S	S										T	T	T		S	B						T	T				B							T	T	S																															S	S
Template Predicted Secondary structure
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	I	N	G	G	A	P	Q	R	I	T	W	E	G	S	Q	N	Q	D	A	D	V	S	S	D	G	K	F	M	V	M	V	S	S	N	G	G	Q	Q	H	I	A	K	Q	D	L	A	T	G	G	V	Q	V	L	S	S	T	F	L	D	E	T	P	S	L	A	P	N	G	T	M	V	I	Y	S	S	S	Q	G
Query Conservation
Alig confidence																																								.	.	.																			.
Template Conservation																																								.	.	.																			.
Template Sequence		I	Y	Q	R	L	H	V	A	A	K	L	P	G	H	K	S	L	I	R	S	I	S	W	A	P	S	Y	Q	L	I	A	T	G	C	K	D	G	R	.	.	.	I	R	I	F	K	I	T	E	N	L	Q	V	E	L	L	S	G	E	.	V	W	S	V	S	W	N	L	T	G	T	I	L	S	S	A	G	D	D	G
Template Known Secondary structure																S	S																			T	T	S		.	.	.												B			B				.								S	S	S								T	T	S
Template Predicted Secondary structure																																								.	.	.																			.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230				.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		397	.	.	400	.	.	.	.	.	.		.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		M	G	S	V	L	N	L	V	S	T	.	D	G	R	F	K	A	R	L	P	A	T	D	G	Q
Query Conservation												.
Alig confidence		.	.	.								.
Template Conservation		.	.	.
Template Sequence		.	.	.	K	V	R	L	W	K	A	T	Y	S	N	E	F	K	C	M	S	V	I	T	A	Q
Template Known Secondary structure		.	.	.									T	T	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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