Job Description P0A855 Confidence 99.59% Date Thu Jan 5 11:06:56 GMT 2012 Rank 78 Aligned Residues 255 % Identity 9% Template c3ei4D_ PDB info PDB header:dna binding protein Chain: D: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-hsddb2 complex Resolution 3.30 Å

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		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.				.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.													.
Query SS confidence																																						.	.	.													.
Query Sequence		A	F	R	T	R	I	A	Y	V	V	Q	T	N	G	G	Q	F	P	Y	E	L	R	V	S	D	Y	D	G	Y	N	Q	F	V	V	H	R	.	.	.	S	P	Q	P	L	M	S	P	A	W	S	P	.	D	G	S	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G	A	V	R
Query Conservation																																						.	.	.													.
Alig confidence																.	.	.	.	.																		.	.	.													.													.	.	.
Template Conservation																.	.	.	.	.																																														.	.	.
Template Sequence		P	T	H	P	S	T	V	A	V	G	S	K	G	G	.	.	.	.	.	D	I	M	L	W	N	F	G	I	K	D	K	P	T	F	I	K	G	I	G	A	G	G	S	I	T	G	L	K	F	N	P	L	N	T	N	Q	F	Y	A	S	S	M	E	G	.	.	.	T	T	R	L	Q	D	F	K	G	N	I	L	R
Template Known Secondary structure		S	S		S	S							S	S	S	.	.	.	.	.							S	S	S		S									S	S	S								B		T	T		T	T							T	T	S	.	.	.							T	T	T
Template Predicted Secondary structure																.	.	.	.	.																																														.	.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.						.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.				180	.	.	.	.	.	.	.	.	.	190	.	.
		238	.	240	.				.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure						.	.	.
Query SS confidence						.	.	.
Query Sequence		Q	V	A	S	.	.	.	F	P	R	H	N	G	A	P	A	F	S	P	D	G	S	K	L	A	F	A	L	S	K	T	G	S	L	N	L	Y	V	M	D	L	A	S	G	Q	I	R	Q	V	T	D	G	R	S	N	N	T	E	P	T	W	F	P	D	S	Q	N	L	A	F	T	S	D	Q	A	G	R	P	Q	V
Query Conservation						.	.	.
Alig confidence						.	.	.																			.	.	.
Template Conservation																											.	.	.
Template Sequence		V	F	A	S	S	D	T	I	N	I	W	F	C	S	L	D	V	S	A	S	S	R	M	V	V	.	.	.	T	G	D	N	V	G	N	V	I	L	L	N	M	D	G	K	E	L	W	N	L	R	M	H	K	K	K	V	T	H	V	A	L	N	P	C	C	D	W	F	L	A	T	A	S	V	D	Q	T	V	K	I
Template Known Secondary structure							S	S	T	T										T	T	T	T				.	.	.				S	S	S							T	T			B							S	S	S									T	T	S	T	T							T	T	S
Template Predicted Secondary structure																											.	.	.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.				.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		315	.	.	.	.			320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.							.	380	.	.	.	.	.	.
Predicted Secondary structure							.	.																																																												.	.	.	.	.	.
Query SS confidence							.	.																																																												.	.	.	.	.	.
Query Sequence		Y	K	V	N	I	.	.	N	G	G	A	P	Q	R	I	T	W	E	G	S	Q	N	Q	D	A	D	V	S	S	D	G	K	F	M	V	M	V	S	S	N	G	G	Q	Q	H	I	A	K	Q	D	L	A	T	G	G	V	Q	V	L	S	S	T	F	L	D	E	.	.	.	.	.	.	T	P	S	L	A	P	N	G
Query Conservation							.	.																																																												.	.	.	.	.	.
Alig confidence							.	.																													.																															.	.	.	.	.	.
Template Conservation																																					.
Template Sequence		W	D	L	R	Q	V	R	G	K	A	S	F	L	Y	S	L	P	H	R	H	P	V	N	A	A	C	F	S	P	D	G	A	R	L	L	.	T	T	D	Q	K	S	E	I	R	V	Y	S	A	S	Q	W	D	C	P	L	G	L	I	P	H	P	H	R	H	F	Q	H	L	T	P	I	K	A	A	W	H	P	R	Y
Template Known Secondary structure				T	T	T			S	S	S			S						S	S									T	T	S	S				.				S	S	S							T	T		S	S	S		S											T	T	S									S	S	S
Template Predicted Secondary structure																																					.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		387	.	.	390	.	.	.	.	.										.	.	.	.	400	.	.	.	.	.	.		.	.	.	410	.	.	.	.	.		.	.	.	.	420	.	.	.	.		.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.												.										.										.
Query SS confidence											.	.	.	.	.	.	.	.	.												.										.										.
Query Sequence		T	M	V	I	Y	S	S	S	Q	.	.	.	.	.	.	.	.	.	G	M	G	S	V	L	N	L	V	S	T	.	D	G	R	F	K	A	R	L	P	.	A	T	D	G	Q	V	K	F	P	.	A	W	S	P
Query Conservation											.	.	.	.	.	.	.	.	.												.										.										.
Alig confidence											.	.	.	.	.	.	.	.	.												.										.										.
Template Conservation
Template Sequence		N	L	I	V	V	G	R	Y	P	D	P	N	F	K	S	C	T	P	Y	E	L	R	T	I	D	V	F	D	G	N	S	G	K	M	M	C	Q	L	Y	D	P	E	S	S	G	I	S	S	L	N	E	F	N	P
Template Known Secondary structure		S										T	T	S			S	S	S				S							S	S	S										T	T	T		S									S
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions