Job Description P0A855 Confidence 99.60% Date Thu Jan 5 11:06:56 GMT 2012 Rank 76 Aligned Residues 234 % Identity 15% Template c3ei3B_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-drddb2 complex Resolution 2.30 Å

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		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.				.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																				.																																	.	.	.
Query SS confidence																				.																																	.	.	.
Query Sequence		Q	F	V	V	H	R	S	P	Q	P	L	M	S	P	A	W	S	P	.	D	G	S	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G	A	V	R	Q	V	A	S	.	.	.	F	P	R	H	N	G	A	P	A	F	S	P	D	G	S	K	L	A	F	A	L	S	K	T	G	S
Query Conservation																				.																																	.	.	.
Alig confidence																				.													.	.	.																		.	.	.
Template Conservation																																	.	.	.
Template Sequence		H	R	T	A	S	P	F	D	R	R	V	T	S	L	E	W	H	P	T	H	P	T	T	V	A	V	G	S	K	G	G	.	.	.	D	I	I	L	W	D	Y	D	V	Q	N	K	T	S	F	I	Q	G	M	G	P	G	D	A	I	T	G	M	K	F	N	Q	F	N	T	N	Q	L	F	V	S	S	I	R	G	A
Template Known Secondary structure									S	S									S	S		T	T							B	T	S	.	.	.							T	T	S	T	T									S	T	T		B								T	T										T	T	T
Template Predicted Secondary structure																																	.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170				.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	L	Y	V	M	D	L	A	S	G	Q	I	R	Q	V	T	D	G	R	S	N	N	T	E	P	T	W	F	P	D	S	Q	N	L	A	F	T	S	D	Q	A	G	R	P	Q	V	Y	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	T	L	R	D	F	S	G	S	V	I	Q	V	F	A	K	T	D	S	W	D	Y	W	Y	C	C	V	D	V	S	V	S	R	Q	M	L	A	T	G	D	S	T	G	R	L	L	L	L	G	L	D	G	H	E	I	F	K	E	K	L	H	K	A	K	V	T	H	A	E	F	N	P	R	C	D	W	L	M	A	T
Template Known Secondary structure							T	T	S												S	S										T	T	T	T							T	T	S							T	T	S									S	S	S									S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
															317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.							.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																																													.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																																													.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	V	N	I	N	G	G	A	P	Q	R	I	T	W	E	G	S	Q	N	Q	D	A	D	V	S	S	D	G	K	F	M	V	M	V	S	S	N	G	G	Q	Q	H	I	A	K	Q	D	L	A	T	G	G	V	Q	V	L	S	S	T	F	L	.	.	.	.	.	.	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																																													.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																																													.	.	.	.	.	.
Template Conservation
Template Sequence		S	S	V	D	A	T	V	K	L	W	D	L	R	N	I	K	D	K	N	S	Y	I	A	E	M	P	H	E	K	P	V	N	A	A	Y	F	N	P	T	D	S	T	K	L	L	T	T	D	Q	R	N	E	I	R	V	Y	S	S	Y	D	W	S	K	P	D	Q	I	I	I	H	P	H	R	Q	F	Q	H	L	T	P
Template Known Secondary structure				T	T	S							G	G	G			S	T	T									S	S									T	T	T	S								S	S	S							T	T	B	T	T	S		S							B				T	T	S
Template Predicted Secondary structure
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.							.	.	.	.	400	.	.	.	.	.	.		.	.	.	410	.	.	.	.			.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.												.									.	.
Query SS confidence																				.	.	.	.	.	.												.									.	.
Query Sequence		E	T	P	S	L	A	P	N	G	T	M	V	I	Y	S	S	S	Q	.	.	.	.	.	.	G	M	G	S	V	L	N	L	V	S	T	.	D	G	R	F	K	A	R	L	.	.	P	A	T	D	G	Q	V	K	F	P	A	W	S	P
Query Conservation																				.	.	.	.	.	.												.									.	.
Alig confidence																				.	.	.	.	.	.												.									.	.
Template Conservation
Template Sequence		I	K	A	T	W	H	P	M	Y	D	L	I	V	A	G	R	Y	P	D	D	Q	L	L	L	N	D	K	R	T	I	D	I	Y	D	A	N	S	G	G	L	V	H	Q	L	R	D	P	N	A	A	G	I	I	S	L	N	K	F	S	P
Template Known Secondary structure								S	S	S	S							B			T	T	T		T	T										T	T	T									B	T	T	B		S									T
Template Predicted Secondary structure
Template SS confidence
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions