Job Description P0A855 Confidence 99.95% Date Thu Jan 5 11:06:56 GMT 2012 Rank 10 Aligned Residues 249 % Identity 15% Template c3c5mC_ PDB info PDB header:lyase Chain: C: PDB Molecule:oligogalacturonate lyase; PDBTitle: crystal structure of oligogalacturonate lyase (vpa0088)2 from vibrio parahaemolyticus. northeast structural3 genomics consortium target vpr199 Resolution 2.60 Å

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		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.						.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																											.	.	.	.	.																																						.
Query SS confidence																											.	.	.	.	.																																						.
Query Sequence		Y	E	L	R	V	S	D	Y	D	G	Y	N	Q	F	V	V	H	R	S	P	Q	P	L	M	S	.	.	.	.	.	P	A	W	S	P	D	G	S	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G	A	V	R	Q	V	A	S	.	F	P	R	H	N	G	A	P	A	F	S	P
Query Conservation																											.	.	.	.	.																																						.
Alig confidence																											.	.	.	.	.																																						.
Template Conservation
Template Sequence		F	E	T	F	V	D	S	D	T	Q	V	K	V	T	R	L	T	P	T	D	I	I	C	H	R	N	Y	F	Y	Q	K	C	F	T	Q	D	G	K	K	L	L	F	A	G	D	F	D	G	N	R	N	Y	Y	L	L	N	L	E	T	Q	Q	A	V	Q	L	T	E	G	K	G	D	N	T	F	G	G	F	I	S	T
Template Known Secondary structure								T	T	T								S		T	T	S							T	T	S			B		T	T	S									T	T	S	S								T	T	T	T								S	S		B		T	T	T					T
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		254	.	.	.	.	.	260	.	.	.	.																																																																.	.	.	.	.	270
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	G	S	K	L	A	F	A	L	S	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	S	L	N	L
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	E	R	A	F	F	Y	V	K	N	E	L	N	L	X	K	V	D	L	E	T	L	E	E	Q	V	I	Y	T	V	D	E	E	W	K	G	Y	G	T	W	V	A	N	S	D	C	T	K	L	V	G	I	E	I	L	K	R	D	W	Q	P	L	T	S	W	E	K	F	A	E	F	Y	H	T	N	P	T	C	R	L
Template Known Secondary structure		T	S	S							T	T	T							T	T	T											T	T											T	T	S	S									G	G	G						S										T
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.							.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.
Query Sequence		Y	V	M	D	L	A	S	G	Q	I	R	Q	V	T	D	G	R	S	N	N	T	E	P	T	W	F	P	D	S	Q	N	L	A	F	T	S	D	Q	A	G	R	P	.	.	.	.	.	.	Q	V	Y	K	V	N	I	N	G	G	A	P	Q	R	I	T	W	E	G	S	Q	N	Q	D	A	D	V	S	S	D	G	K
Query Conservation																																												.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.
Template Conservation
Template Sequence		I	K	V	D	I	E	T	G	E	L	E	V	I	H	Q	D	T	A	W	L	G	H	P	I	Y	R	P	F	D	D	S	T	V	G	F	C	H	E	G	P	H	D	L	V	D	A	R	X	W	L	V	N	E	D	G	S	N	V	R	K	I	K	E	H	A	E	G	E	S	C	T	H	E	F	W	I	P	D	G	S
Template Known Secondary structure						T	T	T										S	S									T	T											S		S	S	S		S								T	T	S						S	S				T	T										T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		345	.	.	.	.	350	.	.	.	.			.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390															.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	M	V	M	V	S	S	N	G	G	.	.	Q	Q	H	I	A	K	Q	D	L	A	T	G	G	V	Q	V	L	S	S	T	F	L	D	E	T	P	S	L	A	P	N	G	T	M	V	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	S	S	S	Q	G	M	G	S	V	L	N	L	V	S	T	D	G
Query Conservation												.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	X	A	Y	V	S	Y	F	K	G	Q	T	D	R	V	I	Y	K	A	N	P	E	T	L	E	N	E	E	V	X	V	X	P	P	C	S	H	L	X	S	N	F	D	G	S	L	X	V	G	D	G	C	D	A	N	I	E	N	D	P	F	L	Y	V	L	N	T	K	A	K	S	A	Q	K	L	C	K	H	S	T
Template Known Secondary structure										T	T	T										T	T	T											S								S	S	S	S																						T	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	K	A	R	L	P	A	T	D	G	Q	V	K	F	P	A	W	S	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	W	D	V	L	D	G	D	R	Q	I	T	H	P	H	P	S	F	T	P
Template Known Secondary structure						B	T	T	B	S	S	T	T								T
Template Predicted Secondary structure
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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