Job Description P0A855 Confidence 99.45% Date Thu Jan 5 11:06:56 GMT 2012 Rank 101 Aligned Residues 213 % Identity 11% Template c3bg1E_ PDB info PDB header:protein transport, hydrolase Chain: E: PDB Molecule:protein sec13 homolog; PDBTitle: architecture of a coat for the nuclear pore membrane Resolution 3.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.				.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.
Query SS confidence																																						.	.	.
Query Sequence		Q	P	L	M	S	P	A	W	S	P	D	G	S	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G	A	.	.	.	V	R	Q	V	A	S	F	P	R	H	N	G	A	P	A	F	S	P	D	G	S	K	L	A	F	A	L	S	K	T	G	S	L	N	L	Y	V	M	D	L	A
Query Conservation																																						.	.	.
Alig confidence																								.	.	.												.	.	.
Template Conservation																								.	.	.
Template Sequence		D	M	I	H	D	A	Q	M	D	Y	Y	G	T	R	L	A	T	C	S	S	D	R	.	.	.	S	V	K	I	F	D	V	R	N	G	G	Q	I	L	I	A	D	L	R	G	H	E	G	P	V	W	Q	V	A	W	A	H	P	M	Y	G	N	I	L	A	S	C	S	Y	D	R	K	V	I	I	W	R	E	E	N
Template Known Secondary structure											G	G	G								T	T	T	.	.	.									T	T												S	S										G	G	G	S	S							T	T	S								S	S
Template Predicted Secondary structure																								.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.				.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.																																																												.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	G	Q	I	R	Q	V	T	D	G	R	S	N	N	T	E	P	T	W	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	T	W	E	K	S	H	E	H	A	G	H	D	S	S	V	N	S	V	C	W	A	P	H	D	Y	G	L	I	L	A	C	G	S	S	D	G	A	I	S	L	L	T	Y	T	G	E	G	Q	W	E	V	K	K	I	N	N	A	H	T	I	G	C	N	A	V	S	W	A	P	A	V	V	P	P	S	G	Q	K	P
Template Known Secondary structure		S												S	S										T	T	T		S							S	S	S									S	S	S							B	T	T	S	S	S	S		B														S
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.						.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure																																											.	.	.	.	.																																		.
Query SS confidence																																											.	.	.	.	.																																		.
Query Sequence		D	S	Q	N	L	A	F	T	S	D	Q	A	G	R	P	Q	V	Y	K	V	N	I	N	G	G	A	P	Q	R	I	T	W	E	G	S	Q	N	Q	D	A	D	.	.	.	.	.	V	S	S	D	G	K	F	M	V	M	V	S	S	N	G	G	Q	Q	H	I	A	K	Q	D	L	A	T	G	G	V	Q	V	L	.
Query Conservation																																											.	.	.	.	.																																		.
Alig confidence																																											.	.	.	.	.																																		.
Template Conservation
Template Sequence		N	Y	I	K	R	F	A	S	G	G	C	D	N	L	I	K	L	W	K	E	E	E	D	G	Q	W	K	E	E	Q	K	L	E	A	H	S	D	W	V	R	D	V	A	W	A	P	S	I	G	L	P	T	S	T	I	A	S	C	S	Q	D	G	R	V	F	I	W	T	C	D	D	A	S	S	N	T	W	S	P	K
Template Known Secondary structure						B					B	T	T	S	B								T	T	S									B			S	S											S	S		S									T	T											S	S	S
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
					372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.		.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																																					.
Query SS confidence		.	.	.																																					.
Query Sequence		.	.	.	S	S	T	F	L	D	E	T	P	S	L	A	P	N	G	T	M	V	I	Y	S	S	S	Q	G	M	G	S	V	L	N	L	V	S	T	D	.	G	R	F	K	A	R	L	P	A	T	D
Query Conservation		.	.	.																																					.
Alig confidence		.	.	.																										.	.	.									.
Template Conservation																														.	.	.
Template Sequence		L	L	H	K	F	N	D	V	V	W	H	V	S	W	S	I	T	A	N	I	L	A	V	S	G	G	D	N	.	.	.	K	V	T	L	W	K	E	S	V	D	G	Q	W	V	C	I	S	D	V	N
Template Known Secondary structure							S	S									T	T	T								S	S	S	.	.	.									T	T	S
Template Predicted Secondary structure																														.	.	.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.				.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions