Job Description P0A855 Confidence 99.51% Date Thu Jan 5 11:06:56 GMT 2012 Rank 88 Aligned Residues 244 % Identity 12% Template c3acpA_ PDB info PDB header:chaperone Chain: A: PDB Molecule:wd repeat-containing protein ygl004c; PDBTitle: crystal structure of yeast rpn14, a chaperone of the 19s regulatory2 particle of the proteasome Resolution 2.00 Å

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		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.		.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		A	Y	V	V	Q	T	N	G	G	Q	F	P	Y	E	L	R	V	S	D	Y	D	G	Y	N	Q	F	V	V	H	R	S	P	Q	P	L	M	S	P	A	W	S	P	D	G	S	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G	A	V	.	R	Q	V	A	S	F	P	R	H	N
Query Conservation																																																																							.
Alig confidence										.	.	.	.	.																																										.	.	.													.
Template Conservation										.	.	.	.	.																																										.	.	.
Template Sequence		L	Y	K	A	R	L	D	G	.	.	.	.	.	H	D	F	L	F	N	T	I	I	R	D	G	S	K	M	L	K	R	A	D	Y	T	A	V	D	T	A	K	L	Q	M	R	R	F	I	L	G	T	T	E	G	.	.	.	D	I	K	V	L	D	S	N	F	N	L	Q	R	E	I	D	Q	A	H	V	S	E	I
Template Known Secondary structure								T	T	.	.	.	.	.												T	T	T	T	S													S	S	S								T	T	S	.	.	.							T	T								T	T	S	S	S	S
Template Predicted Secondary structure										.	.	.	.	.																																										.	.	.
Template SS confidence
		68	.	70	.	.	.	.	.						.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.				.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	P	A	F	S	P	D	G	S	K	L	A	F	A	L	S	K	T	G	S	L	N	L	Y	V	M	D	L	A	S	G	Q	I	R	Q	V	T	D	G	R	S	N	N	T	E	P	T	W	F	P	D	S	Q	N	L	A	F	T	S	D	Q	A	G	R	P	Q	V	Y	K	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.																																																							.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.
Template Sequence		T	K	L	K	F	F	P	S	G	E	A	L	I	.	.	.	S	S	S	Q	D	M	Q	L	K	I	W	S	V	K	D	G	S	N	P	R	T	L	I	G	H	R	A	T	V	T	D	I	A	I	I	D	R	G	R	N	V	L	S	A	S	L	D	G	T	I	R	L	W	E	C	G	T	G	T	T	I	H	T	F
Template Known Secondary structure								T	T	S	S				.	.	.				T	T	S							T	T	T											S	S									T	T	T	T							T	T	S							T	T	T	T
Template Predicted Secondary structure															.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.				.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
															317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																																																.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																																																.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	V	N	I	N	G	G	A	P	Q	R	I	T	W	E	G	S	Q	N	Q	D	A	D	V	S	S	D	G	K	F	M	V	M	V	S	S	N	G	G	Q	Q	H	I	A	K	Q	D	L	A	T	G	G	V	Q	V	L	S	S	T	F	L	D	E	T	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																																																.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.																							.	.	.	.
Template Conservation																																																					.	.	.
Template Sequence		N	R	K	E	N	P	H	D	G	V	N	S	I	A	L	F	V	G	T	D	R	Q	L	H	E	I	S	T	S	K	K	N	N	L	E	F	G	T	Y	G	K	Y	V	I	A	G	H	V	S	G	V	.	.	.	I	T	V	H	N	V	F	S	K	E	Q	T	I	Q	L	P	S	K	F	T	C	S	C	N	S	L
Template Known Secondary structure				T	T		T	T	S										S					T	T	T	S	S	S					T	T		S	S		T	T								T	T	S		.	.	.						T	T	T										T	T	S	S
Template Predicted Secondary structure																																																					.	.	.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.				.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410				.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.
Query SS confidence																																	.	.	.
Query Sequence		P	S	L	A	P	N	G	T	M	V	I	Y	S	S	S	Q	G	M	G	S	V	L	N	L	V	S	T	D	G	R	F	.	.	.	K	A	R	L	P	A	T	D	G	Q	V	K	F	P	A	W	S	P
Query Conservation																																	.	.	.
Alig confidence																			.	.	.												.	.	.
Template Conservation																			.	.	.
Template Sequence		T	V	D	G	N	N	A	N	Y	I	Y	A	G	Y	E	N	G	.	.	.	M	L	A	Q	W	D	L	R	S	P	E	C	P	V	G	E	F	L	I	N	E	G	T	P	I	N	N	V	Y	F	A	A
Template Known Secondary structure					S	S		T	T							T	T	S	.	.	.							T	T	S	T	T	S		S					S	S	T	T	S									T
Template Predicted Secondary structure																			.	.	.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310				.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions