Job Description P0A855 Confidence 99.32% Date Thu Jan 5 11:06:56 GMT 2012 Rank 118 Aligned Residues 227 % Identity 13% Template c2zkqa_ PDB info PDB header:ribosomal protein/rna Chain: A: PDB Molecule:18s ribosomal rna; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.							.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																					.																										.	.	.	.	.	.
Query SS confidence																					.																										.	.	.	.	.	.
Query Sequence		Q	F	V	V	H	R	S	P	Q	P	L	M	S	P	A	W	S	P	D	.	G	S	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G	A	.	.	.	.	.	.	V	R	Q	V	A	S	F	P	R	H	N	G	A	P	A	F	S	P	D	G	S	K	L	A	F	A	L	S	K
Query Conservation																					.																										.	.	.	.	.	.
Alig confidence									.												.												.	.	.												.	.	.	.	.	.
Template Conservation									.																								.	.	.
Template Sequence		R	G	T	L	K	G	H	.	G	W	V	T	Q	I	A	T	T	P	Q	F	P	D	M	I	L	S	A	S	R	D	K	.	.	.	T	I	I	M	W	K	L	T	R	D	E	T	N	Y	G	I	P	Q	R	A	L	R	G	H	S	H	F	V	S	D	V	V	I	S	S	D	G	Q	F	A	L	S	G	S	W	D
Template Known Secondary structure									.			B								S	S	T	T							T	T	S	.	.	.							S	S	S	S											S	S	S				S		S						T	T	S	S							T	T
Template Predicted Secondary structure									.																								.	.	.
Template SS confidence
		8	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.				.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
																																										265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	S	L	N	L	Y	V	M	D	L	A	S	G	Q	I	R	Q	V	T	D	G	R	S	N	N	T	E	P	T	W	F	P	D	S	Q	N	L	A	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	T	L	R	L	W	D	L	T	T	G	T	T	T	R	R	F	V	G	H	T	K	D	V	L	S	V	A	F	S	S	D	N	R	Q	I	V	S	G	S	R	D	K	T	I	K	L	W	N	T	L	G	V	C	K	Y	T	V	Q	D	E	S	S	E	W	V	S	C	V	R	F	S	P	N	S	S	N	P	I	I
Template Known Secondary structure									S	S	S	S	S										S	S								S	S	S	S							T	T	T							T	T	T																				T	T		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	D	Q	A	G	R	P	Q	V	Y	K	V	N	I	N	G	G	A	P	Q	R	I	T	W	E	G	S	Q	N	Q	D	A	D	V	S	S	D	G	K	F	M	V	M	V	S	S	N	G	G	Q	Q	H	I	A	K	Q	D	L	A	T	G	G	V	Q	V	L	S	S	T	F	L	D	E	T	P	S	L	A	P
Query Conservation
Alig confidence																																																			.	.	.
Template Conservation																																																			.	.	.
Template Sequence		V	S	C	G	W	D	K	L	V	K	V	W	N	L	A	N	C	K	L	K	T	N	H	I	G	H	T	G	Y	L	N	T	V	T	V	S	P	D	G	S	L	C	A	S	G	G	K	D	G	.	.	.	Q	A	M	L	W	D	L	N	E	G	K	H	L	Y	T	L	D	G	G	D	I	I	N	A	L	C	F	S
Template Known Secondary structure						T	T	S							T	T	T		S									S	S									T	T	S	S							T	T	S	.	.	.							T	T	T	T								S	S									T
Template Predicted Secondary structure																																																			.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.				.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410											.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.
Query Sequence		N	G	T	M	V	I	Y	S	S	S	Q	G	M	G	S	V	L	N	L	V	S	T	D	G	R	F	.	.	.	.	.	.	.	.	.	.	K	A	R	L	P	A	T	D	G	Q	V	K	F	P	A	W	S	P
Query Conservation																												.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.												.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.
Template Sequence		P	N	R	Y	W	L	C	A	A	T	G	P	.	.	.	S	I	K	I	W	D	L	E	G	K	I	I	V	D	E	L	K	Q	E	V	I	S	T	S	S	K	A	E	P	P	Q	C	T	S	L	A	W	S	A
Template Known Secondary structure		T	S	S							S	S	S	.	.	.										S	S	S																	S	S									S
Template Predicted Secondary structure														.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.				.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions