Job Description P0A855 Confidence 99.57% Date Thu Jan 5 11:06:56 GMT 2012 Rank 83 Aligned Residues 205 % Identity 19% Template c2xznR_ PDB info PDB header:ribosome Chain: R: PDB Molecule:rack1; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 Resolution 3.93 Å

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		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.							.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.									.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Query Sequence		Q	F	V	V	H	R	S	P	Q	P	L	M	S	P	A	W	.	.	.	.	.	.	S	P	D	G	S	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G	A	.	.	.	.	.	.	.	.	V	R	Q	V	A	S	F	P	R	H	N	G	A	P	A	F	S	P	D	G	S	K
Query Conservation																		.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.															.	.	.												.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.
Template Sequence		R	G	I	L	E	G	H	S	D	W	V	T	S	I	V	A	G	F	S	Q	K	E	N	E	D	S	P	V	L	I	S	G	S	R	D	K	.	.	.	T	V	M	I	W	K	L	Y	E	E	E	Q	N	G	Y	F	G	I	P	H	K	A	L	T	G	H	N	H	F	V	S	D	L	A	L	S	Q	E	N	C	F
Template Known Secondary structure									S	S											S	S	T	T											T	T	S	.	.	.									S	S			S	S	B	S											S	S									S	S	T	T
Template Predicted Secondary structure																																						.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.				50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	F	A	L	S	K	T	G	S	L	N	L	Y	V	M	D	L	A	S	G	Q	I	R	Q	V	T	D	G	R	S	N	N	T	E	P	T	W	F	P	D	S	Q	N	L	A	F	T	S	D	Q	A	G	R	P	Q	V	Y	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.
Template Sequence		A	I	.	.	.	S	S	S	W	D	K	T	L	R	L	W	D	L	R	T	G	T	T	Y	K	R	F	V	G	H	Q	S	E	V	Y	S	V	A	F	S	P	D	N	R	Q	I	L	S	A	G	A	E	R	E	I	K	L	W	N	I	L	G	E	C	K	F	S	S	A	E	K	E	N	H	S	D	W	V	S	C
Template Known Secondary structure				.	.	.				T	T	S							T	T	S	S											S									S	S	T	T							T	T	S							S	S	S								T	T	T	S		S	S
Template Predicted Secondary structure				.	.	.
Template SS confidence
		91	.				.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
																																																																											317	.	.	320	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	N	I	N	G	G	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	R	Y	S	P	I	M	K	S	A	N	K	V	Q	P	F	A	P	Y	F	A	S	V	G	W	D	G	R	L	K	V	W	N	T	N	F	Q	I	R	Y	T	F	K	A	H	E	S	N	V	N	H	L	S	I	S	P	N	G	K	Y	I	A	T	G	G	K	D	K	K	L	L	I	W	D	I	L	N	L	T	Y
Template Known Secondary structure										S		S				S	S									T	T	S							T	T	T										S	S									T	T	S	S							T	T								S	S			S	S
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.																.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	Q	R	I	T	W	E	G	S	Q	N	Q	D	A	D	V	S	S	D	G	K	F	M	V	M	V	S	S	N	G	G	Q	Q	H	I	A	K	Q	D	L	A	T	G	G	V	Q	V	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	F	L	D	E	T	P	S	L	A	P	N	G	T	M
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.
Template Sequence		P	Q	R	E	F	D	A	G	S	T	I	N	Q	I	A	F	N	P	K	L	Q	W	V	A	V	G	T	D	Q	G	.	.	.	.	V	K	I	F	N	L	M	T	Q	S	K	A	P	V	C	T	I	E	A	E	P	I	T	K	A	E	G	Q	K	G	K	N	P	Q	C	T	S	L	A	W	N	A	L	G	K	K
Template Known Secondary structure			S						S	S									S	S	S								S	S		.	.	.	.						S	S	S			S		S								S	G	G	G	B	T	T	B			S											S	S	S
Template Predicted Secondary structure																																.	.	.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.					.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	Y	S	S	S	Q	G	M	G	S	V	L	N	L	V	S	T	D	G	R
Query Conservation
Alig confidence										.	.	.
Template Conservation										.	.	.
Template Sequence		L	F	A	G	F	T	D	G	.	.	.	V	I	R	T	F	S	F	E	T	S
Template Known Secondary structure							T	T	S	.	.	.
Template Predicted Secondary structure										.	.	.
Template SS confidence
		324	.	.	.	.	.	330	.				.	.	.	.	.	.	.	.	340	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions