Job Description P0A855 Confidence 99.66% Date Thu Jan 5 11:06:56 GMT 2012 Rank 65 Aligned Residues 251 % Identity 10% Template c2w18A_ PDB info PDB header:nuclear protein Chain: A: PDB Molecule:partner and localizer of brca2; PDBTitle: crystal structure of the c-terminal wd40 domain of human2 palb2 Resolution 1.90 Å

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		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.					.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.
Query SS confidence																															.	.	.	.
Query Sequence		F	R	T	R	I	A	Y	V	V	Q	T	N	G	G	Q	F	P	Y	E	L	R	V	S	D	Y	D	G	Y	N	.	.	.	.	Q	F	V	V	H	R	S	P	Q	P	L	M	S	P	A	W	S	P	D	G	S	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G	A	V	R	Q
Query Conservation																															.	.	.	.
Alig confidence															.	.	.	.	.												.	.	.	.																																	.
Template Conservation															.	.	.	.	.																																																.
Template Sequence		W	E	K	E	P	C	I	I	T	A	C	E	D	.	.	.	.	.	V	V	S	L	W	K	A	L	D	A	W	Q	W	E	K	L	Y	T	W	H	F	A	E	V	P	V	L	Q	I	V	P	V	P	D	V	Y	N	L	V	C	V	A	L	G	N	L	E	.	I	R	E	I	R	A	L	F	C	E	K	Q	V	L
Template Known Secondary structure													S	S	.	.	.	.	.								S	S	S	S	B											S	S									T	T			S								S	S	S	.
Template Predicted Secondary structure															.	.	.	.	.																																																.
Template SS confidence
		877	.	.	880	.	.	.	.	.	.	.	.	.						890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.		.	.	.	940	.	.	.	.	.	.	.	.	.	950
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.				.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																																													.	.	.
Query SS confidence																																													.	.	.
Query Sequence		V	A	S	F	P	R	H	N	G	A	P	A	F	S	P	D	G	S	K	L	A	F	A	L	S	K	T	G	S	L	N	L	Y	V	M	D	L	A	S	G	Q	I	R	.	.	.	Q	V	T	D	G	R	S	N	N	T	E	P	T	W	F	P	D	S	Q	N	L	A	F	T	S	D	Q	A	G	R	P	Q	V	Y
Query Conservation																																													.	.	.
Alig confidence					.	.																																							.	.	.
Template Conservation					.	.
Template Sequence		L	K	S	.	.	G	N	I	K	A	V	L	G	L	T	K	R	R	L	V	S	S	S	G	T	L	S	D	Q	Q	V	E	V	M	T	F	A	E	D	G	G	G	K	E	N	Q	F	L	M	P	P	E	E	T	I	L	T	F	A	E	V	Q	G	M	Q	E	A	L	L	G	T	T	I	M	N	N	I	V	I	W
Template Known Secondary structure					.	.										T	T	T							S	S	S	T	T										T	T	S												S	S										T	S	T	T							T	T	S
Template Predicted Secondary structure					.	.
Template SS confidence
		961	.	.			.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.						.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure																																																										.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.
Query Sequence		K	V	N	I	N	G	G	A	P	Q	R	I	T	W	E	G	S	Q	N	Q	D	A	D	V	S	S	D	G	K	F	M	V	M	V	S	S	N	G	G	Q	Q	H	I	A	K	Q	D	L	A	T	G	G	V	Q	V	L	.	.	.	.	.	S	S	T	F	L	D	E	T	P	S	L	A	P	N	G	T	M	V	I
Query Conservation																																																										.	.	.	.	.
Alig confidence				.																																				.	.	.																.	.	.	.	.
Template Conservation				.																																				.	.	.
Template Sequence		N	L	.	K	T	G	Q	L	L	K	K	M	H	I	D	D	A	S	V	C	H	K	A	Y	S	E	M	G	L	L	F	I	V	L	S	P	V	F	.	.	.	Q	L	I	V	I	N	P	K	T	T	L	S	V	G	V	M	L	Y	C	L	P	P	G	Q	A	G	R	F	L	E	G	D	V	K	D	H	C	A	A
Template Known Secondary structure			T	.	T	T																						T	T											.	.	.							T	T	T	T												T	T												T	T
Template Predicted Secondary structure				.																																				.	.	.
Template SS confidence
		1039	1040		.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.				.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	S	S	S	Q	G	M	G	S	V	L	N	L	V	S	T	D	G	R	F	K	A	R	L	P	A	T	D	G	Q	V	K	F	P	A	W	S	P
Query Conservation
Alig confidence								.	.	.
Template Conservation								.	.	.
Template Sequence		A	I	L	T	S	G	.	.	.	T	I	A	I	W	D	L	L	L	G	Q	C	T	A	L	L	P	P	V	Q	H	W	S	F	V	K	W	S	G
Template Known Secondary structure					T	T	S	.	.	.							T	T	T		S																		S
Template Predicted Secondary structure								.	.	.
Template SS confidence
		1130	.	.	.	.	.				.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions