Job Description P0A855 Confidence 99.91% Date Thu Jan 5 11:06:56 GMT 2012 Rank 21 Aligned Residues 262 % Identity 15% Template c2qtbB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:dipeptidyl peptidase 4; PDBTitle: human dipeptidyl peptidase iv/cd26 in complex with a 4-aryl2 cyclohexylalanine inhibitor Resolution 2.25 Å

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		161	.	.	.	.	.	.	.	.	170	.	.	.	.				.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.
Query SS confidence																.	.	.
Query Sequence		G	A	F	R	T	R	I	A	Y	V	V	Q	T	N	.	.	.	G	G	Q	F	P	Y	E	L	R	V	S	D	Y	D	G	Y	N	Q	F	V	V	H	R	S	P	Q	P	L	M	S	P	A	W	S	P	D	G	S	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G	A	V	R
Query Conservation																.	.	.
Alig confidence																.	.	.																																															.	.	.	.
Template Conservation																																																																	.	.	.	.
Template Sequence		S	P	D	G	Q	F	I	L	L	E	Y	N	Y	V	K	Q	W	R	H	S	Y	T	A	S	Y	D	I	Y	D	L	N	K	R	Q	L	I	T	E	E	R	I	P	N	N	T	Q	W	V	T	W	S	P	V	G	H	K	L	A	Y	V	W	N	N	.	.	.	.	D	I	Y	V	K	I	E	P	N	L	P	S	Y
Template Known Secondary structure			T	T	S	S												S	S	S											T	T	T	T					S	S				S	S	B							S	S	T	T							T	T	.	.	.	.						S	S	T	T	S
Template Predicted Secondary structure																																																																	.	.	.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170					.	.	.	.	.	.	.	.	.	180	.	.	.
		238	.	240	.	.	.	.	.	.																				.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	V	A	S	F	P	R	H	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	P	A	F	S	P	D	G	S	K	L	A	F	A	L	S	K	T	G	S	L	N	L	Y	V	M	D	L	A	S	G	Q	I	R	Q	V	T	D	G	R	S	N	N	T	E	P	T	W	F	P	D
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	I	T	W	T	G	K	E	D	I	I	Y	N	G	I	T	D	W	V	Y	E	E	E	V	F	S	A	Y	S	A	L	W	W	S	P	N	G	T	F	L	A	Y	A	Q	F	N	D	T	E	V	P	L	I	E	Y	S	F	Y	S	D	E	S	L	Q	Y	P	K	T	V	R	V	P	Y	P	K	A	G	A	V	N
Template Known Secondary structure					S			B	T	T	T				S	B									T	T	S	S	S	B						T	T	S	S										T	T											S	T	T		S	S										B	T	T	S
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		299	300		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.				.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure				.																																																							.	.	.																			.	.
Query SS confidence				.																																																							.	.	.																			.	.
Query Sequence		S	Q	.	N	L	A	F	T	S	D	Q	A	G	R	P	Q	V	Y	K	V	N	I	N	G	G	A	P	Q	R	I	T	W	E	G	S	Q	N	Q	D	A	D	V	S	S	D	G	K	F	M	V	M	V	S	S	N	G	G	.	.	.	Q	Q	H	I	A	K	Q	D	L	A	T	G	G	V	Q	V	L	S	.	.
Query Conservation				.																																																							.	.	.																			.	.
Alig confidence				.																																																							.	.	.																			.	.
Template Conservation
Template Sequence		P	T	V	K	F	F	V	V	N	T	D	S	L	S	S	V	T	N	A	T	S	I	Q	I	T	A	P	A	S	M	L	I	G	D	H	Y	L	C	D	V	T	W	A	T	Q	E	R	I	S	L	Q	W	L	R	R	I	Q	N	Y	S	V	M	D	I	C	D	Y	D	E	S	S	G	R	W	N	C	L	V	A	R
Template Known Secondary structure											G	G	G	T	T	T	S	S	S														T	S												T	T									S	S	T	T											T	T	T	T						G	G	G
Template Predicted Secondary structure
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
													373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.		.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																				.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																				.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	S	T	F	L	D	E	T	P	S	L	A	P	N	G	T	M	V	I	Y	.	S	S	S	Q	G	M	G	S	V	L	N	L	V	S	T	D	G	R	F	K	A	R	L	P	A	T	D	G	Q	V	K	F	P	A	W
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																				.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation
Template Sequence		Q	H	I	E	M	S	T	T	G	W	V	G	R	F	R	P	S	E	P	H	F	T	L	D	G	N	S	F	Y	K	I	I	S	N	E	E	G	Y	R	H	I	C	Y	F	Q	I	D	K	K	D	C	T	F	I	T	K	G	T	W	E	V	I	G	I	E	A
Template Known Secondary structure								S	S	S		S	S	S	S	S								T	T	S	S									T	T	S									T	T		S					S			S	S	S
Template Predicted Secondary structure
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions