Job Description P0A855 Confidence 99.55% Date Thu Jan 5 11:06:56 GMT 2012 Rank 86 Aligned Residues 249 % Identity 10% Template c2pm9A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:protein transport protein sec31; PDBTitle: crystal structure of yeast sec13/31 vertex element of the2 copii vesicular coat Resolution 3.30 Å

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		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.						.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																	.														.	.																																			.	.	.	.	.
Query SS confidence																	.														.	.																																			.	.	.	.	.
Query Sequence		N	G	G	Q	F	P	Y	E	L	R	V	S	D	Y	D	.	G	Y	N	Q	F	V	V	H	R	S	P	Q	P	.	.	L	M	S	P	A	W	S	P	D	G	S	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G	A	.	.	.	.	.	V	R	Q	V	A	S	F	P	R	H
Query Conservation																	.														.	.																																			.	.	.	.	.
Alig confidence																	.														.	.																					.	.	.												.	.	.	.	.
Template Conservation																																																					.	.	.
Template Sequence		A	N	F	S	T	D	S	S	L	E	L	W	S	L	L	A	A	D	S	E	K	P	I	A	S	L	Q	V	D	S	K	F	N	D	L	D	W	S	H	N	N	K	I	I	A	G	A	L	D	N	G	.	.	.	S	L	E	L	Y	S	T	N	E	A	N	N	A	I	N	S	M	A	R	F	S	N	H	S	S	S
Template Known Secondary structure		S	S												S	S	S	G	G	G		S		S						S	S									S	S	S	S							S	S	S	.	.	.								S	S	T	T	S											S	S	S
Template Predicted Secondary structure																																																					.	.	.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.				.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	G	A	P	A	F	S	P	D	G	S	K	L	A	F	A	L	S	K	T	G	S	L	N	L	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	K	T	V	K	F	N	A	K	Q	D	N	V	L	A	S	G	G	N	N	G	E	I	F	I	W	D	M	N	K	C	T	E	S	P	S	N	Y	T	P	L	T	P	G	Q	S	M	S	S	V	D	E	V	I	S	L	A	W	N	Q	S	L	A	H	V	F	A	S	A	G	S	S	N	F	A	S	I	W	D	L
Template Known Secondary structure									S	S	S	T	T	B						S	S	S				B		B	T	T	T	T	S	S		T	T	T				B					S			S	S										S	S		T	T						S	S	S	S							T
Template Predicted Secondary structure
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
					272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.					.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure		.	.	.																																															.	.	.	.
Query SS confidence		.	.	.																																															.	.	.	.
Query Sequence		.	.	.	V	M	D	L	A	S	G	Q	I	R	Q	V	T	D	G	R	S	N	N	T	E	P	T	W	F	P	D	S	Q	N	L	A	F	T	S	D	Q	A	G	R	P	Q	V	Y	K	V	.	.	.	.	N	I	N	G	G	A	P	Q	R	I	T	W	E	G	S	Q	N	Q	D	A	D	V	S	S	D	G	K
Query Conservation		.	.	.																																															.	.	.	.
Alig confidence		.	.	.																																															.	.	.	.
Template Conservation
Template Sequence		K	A	K	K	E	V	I	H	L	S	Y	T	S	P	N	S	G	I	K	Q	Q	L	S	V	V	E	W	H	P	K	N	S	T	R	V	A	T	A	T	G	S	D	N	D	P	S	I	L	I	W	D	L	R	N	A	N	T	P	L	Q	T	L	N	Q	G	H	Q	K	G	I	L	S	L	D	W	C	H	Q	D	E
Template Known Secondary structure		T	T	T												S	S													S	S		T	T									S	S	S								T	T	S	T	T	S		S	B				S			S	S									S	S		S
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.		.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure																																												.																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	M	V	M	V	S	S	N	G	G	Q	Q	H	I	A	K	Q	D	L	A	T	G	G	V	Q	V	L	S	S	T	F	L	D	E	T	P	S	L	A	P	N	G	.	T	M	V	I	Y	S	S	S	Q	G	M	G	S	V	L	N	L	V	S	T	D	G	R	F	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																												.																									.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																												.											.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.
Template Sequence		H	L	L	L	S	S	G	R	D	N	T	V	L	L	W	N	P	E	S	A	E	Q	L	S	Q	F	P	A	R	G	N	W	C	F	K	T	K	F	A	P	E	A	P	D	L	F	A	C	A	S	F	D	N	.	.	.	K	I	E	V	Q	T	L	Q	N	L	T	N	T	L	D	E	S	K	E	K	P	S	V	F
Template Known Secondary structure		S							S	S	S							S	S	S										S	S	S									T	T		T	T							S	S	S	.	.	.							S						S	S					S				S	S
Template Predicted Secondary structure																																																							.	.	.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.				.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
			411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	K	A	R	L	P	A	T	D	G	Q	V	K	F	P	A	W	S	P
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		H	L	Q	A	P	T	W	Y	G	E	P	S	P	A	A	H	W	A	F
Template Known Secondary structure							S	T	T				S							T
Template Predicted Secondary structure
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions