Job Description P0A855 Confidence 99.29% Date Thu Jan 5 11:06:56 GMT 2012 Rank 122 Aligned Residues 225 % Identity 16% Template c2ovqB_ PDB info PDB header:transcription/cell cycle Chain: B: PDB Molecule:f-box/wd repeat protein 7; PDBTitle: structure of the skp1-fbw7-cyclinedegc complex Resolution 2.60 Å

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		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		G	Y	N	Q	F	V	V	H	R	S	P	Q	P	L	M	S	P	A	W	S	P	D	G	S	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G	A	.	V	R	Q	V	A	S	F	P	R	H	N	G	A	P	A	F	S	P	D	G	S	K	L	A	F	A	L	S	K	T	G	S
Query Conservation																																																	.
Alig confidence																			.																.	.	.												.																	.	.							.	.	.
Template Conservation																			.																.	.	.																													.	.							.	.	.
Template Sequence		L	K	S	P	K	V	L	K	G	H	D	D	H	V	I	T	C	.	L	Q	F	C	G	N	R	I	V	S	G	S	D	D	N	.	.	.	T	L	K	V	W	S	A	V	T	G	K	C	L	R	T	L	V	G	H	T	G	G	V	W	S	S	Q	M	.	.	R	D	N	I	I	I	.	.	.	S	G	S	T	D
Template Known Secondary structure											S	T	T	S					.					T	T							T	T	S	.	.	.							T	T	T											S	S								.	.		T	T				.	.	.				T	T
Template Predicted Secondary structure																			.																.	.	.																													.	.							.	.	.
Template SS confidence
		2370	.	.	.	.	.	.	.	.	.	2380	.	.	.	.	.	.		.	.	.	2390	.	.	.	.	.	.	.	.	.	2400	.				.	.	.	.	.	.	.	.	2410	.	.	.	.	.	.	.	.	.	2420	.	.	.	.	.	.	.	.	.			2430	.	.	.	.	.				.	.	.	.	2440
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	L	Y	V	M	D	L	A	S	G	Q	I	R	Q	V	T	D	G	R	S	N	N	T	E	P	T	W	F	P	D	S	Q	N	L	A	F	T	S	D	Q	A	G	R	P	Q	V	Y	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	T	L	K	V	W	N	A	E	T	G	E	C	I	H	T	L	Y	G	H	T	S	T	V	R	C	M	H	L	H	E	K	R	V	V	S	G	S	R	D	A	T	L	R	V	W	D	I	E	T	G	Q	C	L	H	V	L	M	G	H	V	A	A	V	R	C	V	Q	Y	D	G	R	R	V	V	S	G	A	Y	D
Template Known Secondary structure		S							T	T	T											S	S									T	T							T	T	S							T	T	T											S	S									S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		2441	.	.	.	.	.	.	.	.	2450	.	.	.	.	.	.	.	.	.	2460	.	.	.	.	.	.	.	.	.	2470	.	.	.	.	.	.	.	.	.	2480	.	.	.	.	.	.	.	.	.	2490	.	.	.	.	.	.	.	.	.	2500	.	.	.	.	.	.	.	.	.	2510	.	.	.	.	.	.	.	.	.	2520
																																														317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	N	I	N	G	G	A	P	Q	R	I	T	W	E	G	S	Q	N	Q	D	A	D	V	S	S	D	G	K	F	M	V	M	V	S	S	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	M	V	K	V	W	D	P	E	T	E	T	C	L	H	T	L	Q	G	H	T	N	R	V	Y	S	L	Q	F	D	G	I	H	V	V	S	G	S	L	D	T	S	I	R	V	W	D	V	E	T	G	N	C	I	H	T	L	T	G	H	Q	S	L	T	S	G	M	E	L	K	D	N	I	L	V	S	G	N	A	D
Template Known Secondary structure		S							G	G	G	T										S	S									S	S							T	T	S							T	T	T												S									T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		2521	.	.	.	.	.	.	.	.	2530	.	.	.	.	.	.	.	.	.	2540	.	.	.	.	.	.	.	.	.	2550	.	.	.	.	.	.	.	.	.	2560	.	.	.	.	.	.	.	.	.	2570	.	.	.	.	.	.	.	.	.	2580	.	.	.	.	.	.	.	.	.	2590	.	.	.	.	.	.	.	.	.	2600
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.				.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.		.	.	.	410	.	.	.	.	.						.	.	.	.	420	.	.	.
Predicted Secondary structure																								.	.	.																																	.										.	.	.	.	.
Query SS confidence																								.	.	.																																	.										.	.	.	.	.
Query Sequence		G	G	Q	Q	H	I	A	K	Q	D	L	A	T	G	G	V	Q	V	L	S	S	T	.	.	.	F	L	D	E	T	P	S	L	A	P	N	G	T	M	V	I	Y	S	S	S	Q	G	M	G	S	V	L	N	L	V	S	T	.	D	G	R	F	K	A	R	L	P	.	.	.	.	.	A	T	D	G	Q	V	K	F
Query Conservation																								.	.	.																																	.										.	.	.	.	.
Alig confidence				.	.	.																		.	.	.																							.	.	.								.										.	.	.	.	.
Template Conservation				.	.	.																																											.	.	.
Template Sequence		S	T	.	.	.	V	K	I	W	D	I	K	T	G	Q	C	L	Q	T	L	Q	G	P	N	K	H	Q	S	A	V	T	C	L	Q	F	N	K	N	F	V	I	T	S	S	D	D	G	.	.	.	T	V	K	L	W	D	L	K	T	G	E	F	I	R	N	L	V	T	L	E	S	G	G	S	G	G	V	V	W	R
Template Known Secondary structure		S		.	.	.						T	T	T									S	T	T			S	S									S	S							T	T	S	.	.	.							T	T	T											T	T	G	G	G	T
Template Predicted Secondary structure				.	.	.																																											.	.	.
Template SS confidence
		2601	.				.	.	.	.	.	.	.	2610	.	.	.	.	.	.	.	.	.	2620	.	.	.	.	.	.	.	.	.	2630	.	.	.	.	.	.	.	.	.	2640	.	.	.	.				.	.	.	.	.	2650	.	.	.	.	.	.	.	.	.	2660	.	.	.	.	.	.	.	.	.	2670	.	.	.	.
		424	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	W	S	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	R	A	S	N
Template Known Secondary structure						S
Template Predicted Secondary structure
Template SS confidence
		2675	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions