Job Description P0A855 Confidence 99.19% Date Thu Jan 5 11:06:56 GMT 2012 Rank 127 Aligned Residues 156 % Identity 16% Template c2oitA_ PDB info PDB header:oncoprotein Chain: A: PDB Molecule:nucleoporin 214kda; PDBTitle: crystal structure of the n-terminal domain of the human2 proto-oncogene nup214/can Resolution 1.65 Å

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		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		Q	V	A	S	F	P	R	H	N	G	A	P	A	F	S	P	D	G	S	K	L	A	F	A	L	.	S	K	T	G	S	L	N	L	Y	V	M	D	L	A	S	G	Q	I	R	Q	V	T	D	G	R	S	N	N	T	E	P	T	W	F	P	D	S	Q	N	L	A	F	T	S	D	Q	A	G	R	P	Q	V	Y	K
Query Conservation																											.
Alig confidence																											.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	V	P	M	K	F	P	I	H	H	L	A	L	S	C	D	N	L	T	L	S	A	C	M	M	S	S	E	Y	G	S	I	I	A	F	F	D	V	R	T	F	S	N	E	A	K	Q	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							S	S									T	T	S										T	T	T															T	T		S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	I	N	G	G	A	P	Q	R	I	T	W	E	G	S	Q	N	Q	D	A	D	V	S	S	D	G	K	F	M	V	M	V	S	S	N	G	G	Q	Q	H	I	A	K	Q	D	L	A	T	G	G	V	Q	V	L	S	S	T	F	L	D	E	T	P	S	L	A	P	N	G	T	M	V	I	Y	S	S	S	Q	G
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	K	R	P	F	A	Y	H	K	L	L	K	D	A	G	G	M	V	I	D	M	K	W	N	P	T	V	P	S	M	V	A	V	C	L	A	D	G	S	I	A	V	L	Q	V	T	E	T	V	K	V	C	A	T	L	P	S	T	V	A	V	T	S	V	C	W	S	P	K	G	K	Q	L	A	V	G	K	Q	N	G
Template Known Secondary structure		.				S								S	G	G	G	S								S	S		T	T							T	T	S								S	S	S									G	G	G									T	T	S	S							T	T	S
Template Predicted Secondary structure		.
Template SS confidence
			136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.								.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.
Query Sequence		M	G	S	V	L	N	L	V	S	T	D	G	R	F	K	A	R	L	.	.	.	.	.	.	.	P	A	T	D	G	Q	V	K	F	P	A	W	S	P
Query Conservation																				.	.	.	.	.	.	.
Alig confidence		.	.	.																.	.	.	.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	T	V	V	Q	Y	L	P	T	L	Q	E	K	K	V	I	P	C	P	P	F	Y	E	S	D	H	P	V	R	V	L	D	V	L	W	I	G
Template Known Secondary structure		.	.	.							T	T											T	T			T	T	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions