Job Description P0A855 Confidence 97.93% Date Thu Jan 5 11:06:56 GMT 2012 Rank 151 Aligned Residues 220 % Identity 18% Template c2ismA_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of the putative oxidoreductase (glucose2 dehydrogenase) (ttha0570) from thermus theromophilus hb8 Resolution 1.90 Å

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		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240					.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																																																						.	.	.	.																								.
Query SS confidence																																																						.	.	.	.																								.
Query Sequence		G	Y	N	Q	F	V	V	H	R	S	P	Q	P	L	M	S	P	A	W	S	P	D	G	S	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G	A	V	R	Q	V	A	.	.	.	.	S	F	P	R	H	N	G	A	P	A	F	S	P	D	G	S	K	L	A	F	A	L	S	.
Query Conservation																																																						.	.	.	.																								.
Alig confidence																										.	.										.	.																.	.	.	.																								.
Template Conservation																										.	.										.	.
Template Sequence		G	L	R	V	E	E	V	V	G	G	L	E	V	P	W	A	L	A	F	L	P	D	G	G	.	.	M	L	I	A	E	R	P	G	R	.	.	I	R	L	F	R	E	G	R	L	S	T	Y	A	E	L	S	V	Y	H	R	G	E	S	G	L	L	G	L	A	L	H	P	R	F	P	Q	E	P	Y	V	Y	A	Y
Template Known Secondary structure													S									T	T	S		.	.						T	T	T		.	.						T	T													S	T	T		S								T	T	T	T	T	S
Template Predicted Secondary structure																										.	.										.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.			.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
							264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.											.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	K	T	G	S	L	N	L	Y	V	M	D	L	A	S	G	Q	I	R	Q	.	.	.	.	.	.	.	.	.	.	V	T	D	G	R	S	N	N	T	E	P	T	W	F	P	D	S	Q	N	L	A	F	T	S	D	Q	A	G	R	P	Q	V	Y	K	V	N	I	N	G	G	A	P	Q	R	I	T
Query Conservation		.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	T	V	A	E	G	G	L	R	N	Q	V	V	R	L	R	H	L	G	E	R	G	V	L	D	R	V	V	L	D	G	I	P	A	R	P	H	G	L	H	S	G	G	R	I	A	F	G	P	D	G	M	L	Y	V	T	T	G	E	V	Y	E	R	E	L	A	Q	D	L	A	S	L	G	G	K	I	L	R	L	T
Template Known Secondary structure						T	T	S	S											S	S																T	T												T	T	S									T	T		G	G	G	G	G		T	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		329	330	.	.																								.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	E	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	N	Q	D	A	D	V	S	S	D	G	K	F	M	V	M	V	S	S	N	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	E	G	E	P	A	P	G	N	P	F	L	G	R	R	G	A	R	P	E	V	Y	S	L	G	H	R	N	P	Q	G	L	A	W	H	P	K	T	G	E	L	F	S	S	E	H	G	P	G	H	D	E	V	N	L	I	V	P	G	G	N	Y	G	W	P	R	V	V	G	R	G	N	D	P	R	Y	R	D	P	L
Template Known Secondary structure		T	T	S	S	B		T	T		T	T	T	T		T	T	S		T	T							S									T	T	T																				T	T		B			T	T	T			S					T	T	S				S
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
																	355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.																			.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	Q	H	I	A	K	Q	D	L	A	T	G	G	V	Q	V	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	F	L	D	E	T	P	S	L	A	P	N	G	T	M	V	I	Y	S	S	S	Q	G	M	G	S	V	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	F	W	P	Q	G	F	P	P	G	N	L	A	F	F	R	G	D	L	Y	V	A	G	L	R	G	Q	A	L	L	R	L	V	L	E	G	E	R	G	R	W	R	V	L	R	V	E	T	A	L	S	G	F	G	R	L	R	E	V	Q	V	G	P	D	G	A	L	Y	V	T	T	S	N	R	D	G	R	G	Q	V
Template Known Secondary structure					T	T											T	T							T	T	T	T											T	T													S	S										T	T	S								S	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		402	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	V	S	T	D	G	R	F	K	A	R	L
Query Conservation
Alig confidence			.	.
Template Conservation			.	.
Template Sequence		R	.	.	P	G	D	D	R	V	L	R	L	L
Template Known Secondary structure			.	.	T	T		S
Template Predicted Secondary structure			.	.
Template SS confidence
		342			.	.	.	.	.	.	.	350	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions