Job Description P0A855 Confidence 99.92% Date Thu Jan 5 11:06:56 GMT 2012 Rank 17 Aligned Residues 263 % Identity 17% Template c1z68A_ PDB info PDB header:lyase Chain: A: PDB Molecule:fibroblast activation protein, alpha subunit; PDBTitle: crystal structure of human fibroblast activation protein alpha Resolution 2.60 Å

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		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.				.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.
Query SS confidence																	.	.	.
Query Sequence		A	F	R	T	R	I	A	Y	V	V	Q	T	N	G	G	.	.	.	Q	F	P	Y	E	L	R	V	S	D	Y	D	G	Y	N	Q	F	V	V	H	R	S	P	Q	P	L	M	S	P	A	W	S	P	D	G	S	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G	A	V	R	Q
Query Conservation																	.	.	.
Alig confidence																	.	.	.																																													.	.	.	.
Template Conservation																																																																.	.	.	.
Template Sequence		P	D	R	Q	F	V	Y	L	E	S	D	Y	S	K	L	W	R	Y	S	Y	T	A	T	Y	Y	I	Y	D	L	S	N	G	E	F	V	R	G	N	E	L	P	R	P	I	Q	Y	L	C	W	S	P	V	G	S	K	L	A	Y	V	Y	Q	N	.	.	.	.	N	I	Y	L	K	Q	R	P	G	D	P	P	F	Q
Template Known Secondary structure		T	T	S	S												S	S	S											T	T	T	T					S	S				S	S	B							S	S	T	T							T	T	.	.	.	.						S	S	T	T	S
Template Predicted Secondary structure																																																																.	.	.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.					.	170	.	.	.	.	.	.	.	.	.	180	.	.
		239	240	.	.	.	.	.	.	.	.																				.	250	.	.	.	.	.	.	.	.	.	260	.	.																																.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	S	F	P	R	H	N	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	F	S	P	D	G	S	K	L	A	F	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	K	T	G	S	L
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	T	F	N	G	R	E	N	K	I	F	N	G	I	P	D	W	V	Y	E	E	E	M	L	A	T	K	Y	A	L	W	W	S	P	N	G	K	F	L	A	Y	A	E	F	N	D	T	D	I	P	V	I	A	Y	S	Y	Y	G	D	E	Q	Y	P	R	T	I	N	I	P	Y	P	K	A	G	A	K	N	P	V	V
Template Known Secondary structure							B	T	T	T				S	S									T	T		S	S							T	T	S	S										T	T	S										S	S	S	S										B	T	T	S
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290										.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.																							.
Query SS confidence																								.	.	.	.	.	.	.	.	.																							.
Query Sequence		N	L	Y	V	M	D	L	A	S	G	Q	I	R	Q	V	T	D	G	R	S	N	N	.	.	.	.	.	.	.	.	.	T	E	P	T	W	F	P	D	S	Q	N	L	A	F	T	S	D	Q	A	G	R	P	.	Q	V	Y	K	V	N	I	N	G	G	A	P	Q	R	I	T	W	E	G	S	Q	N	Q	D	A	D
Query Conservation																								.	.	.	.	.	.	.	.	.																							.
Alig confidence																								.	.	.	.	.	.	.	.	.																							.
Template Conservation
Template Sequence		R	I	F	I	I	D	T	T	Y	P	A	Y	V	G	P	Q	E	V	P	V	P	A	M	I	A	S	S	D	Y	Y	F	S	W	L	T	W	V	T	D	E	R	V	C	L	Q	W	L	K	R	V	Q	N	V	S	V	L	S	I	C	D	F	R	E	D	W	Q	T	W	D	C	P	K	T	Q	E	H	I	E	E	S
Template Known Secondary structure								S	S																		T	S										S	S	S	S									S	S	T	T											S	S	S	S	S					G	G	G
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		339	340	.																.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																											.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																											.	.	.	.
Query Sequence		V	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	K	F	M	V	M	V	S	S	N	G	G	Q	Q	H	I	A	K	Q	D	L	A	T	G	G	V	Q	V	L	S	S	T	F	L	D	E	T	P	S	L	A	P	N	G	T	M	V	I	Y	S	S	S	Q	G	M	G	S	.	.	.	.
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																											.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																											.	.	.	.
Template Conservation
Template Sequence		R	T	G	W	A	G	G	F	F	V	S	T	P	V	F	S	Y	D	A	I	S	Y	Y	K	I	F	S	D	K	D	G	Y	K	H	I	H	Y	I	K	D	T	V	E	N	A	I	Q	I	T	S	G	K	W	E	A	I	N	I	F	R	V	T	Q	D	S	L	F	Y	S	S	N	E	F	E	E	Y	P	G	R	R
Template Known Secondary structure		S	S	S		S	S	S	S	S								T	T	S	S									T	T	S								S	S		S	T	T					S		S	S	S										S	S							S		G	G	G		T	T		B
Template Predicted Secondary structure
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
		400	.	.	.	.	.	.	.	.	.	410	.	.	.							.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.
Query Sequence		V	L	N	L	V	S	T	D	G	R	F	K	A	R	.	.	.	.	.	.	L	P	A	T	D	G	Q	V	K	F	P	A	W	S	P
Query Conservation																.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.
Template Conservation
Template Sequence		N	I	Y	R	I	S	I	G	S	Y	P	P	S	K	K	C	V	T	C	H	L	R	K	E	R	C	Q	Y	Y	T	A	S	F	S	D
Template Known Secondary structure									S	S	S	S						S	S	T	T	T	T	T	T	T	B		B							G
Template Predicted Secondary structure
Template SS confidence
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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