Job Description P0A855 Confidence 99.93% Date Thu Jan 5 11:06:56 GMT 2012 Rank 16 Aligned Residues 264 % Identity 17% Template c1xfdD_ PDB info PDB header:membrane protein Chain: D: PDB Molecule:dipeptidyl aminopeptidase-like protein 6; PDBTitle: structure of a human a-type potassium channel accelerating factor2 dppx, a member of the dipeptidyl aminopeptidase family Resolution 3.00 Å

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		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.				.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.				.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																		.	.	.																					.	.	.
Query SS confidence																		.	.	.																					.	.	.
Query Sequence		G	A	F	R	T	R	I	A	Y	V	V	Q	T	N	G	G	.	.	.	Q	F	P	Y	E	L	R	V	S	D	Y	D	G	Y	N	Q	F	V	V	H	.	.	.	R	S	P	Q	P	L	M	S	P	A	W	S	P	D	G	S	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G
Query Conservation																		.	.	.																					.	.	.
Alig confidence																		.	.	.																					.	.	.																									.	.	.	.
Template Conservation																																																																				.	.	.	.
Template Sequence		S	P	D	R	E	Y	A	L	F	S	Y	N	V	E	P	I	Y	Q	H	S	Y	T	G	Y	Y	V	L	S	K	I	P	H	G	D	P	Q	S	L	D	P	P	E	V	S	N	A	K	L	Q	Y	A	G	W	G	P	K	G	Q	Q	L	I	F	I	F	E	N	.	.	.	.	N	I	Y	Y	C	A	H	V	G	K
Template Known Secondary structure			T	T	S	S								S				S	S	S				B							S	S	S									T	T			S			B	S	B			B		S	S	T	T							T	T	.	.	.	.						S	S	S	S	S
Template Predicted Secondary structure																																																																				.	.	.	.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260					.	.	.	.	.	.	.	.	.	270
		235	.	.	.	.	240	.	.																				.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	V	R	Q	V	A	S	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	R	H	N	G	A	P	A	F	S	P	D	G	S	K	L	A	F	A	L	S	K	T	G	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	A	I	R	V	V	S	T	G	K	E	G	V	I	Y	N	G	L	S	D	W	L	Y	E	E	E	I	L	K	T	H	I	A	H	W	W	S	P	D	G	T	R	L	A	Y	A	A	I	N	D	S	R	V	P	I	M	E	L	P	T	Y	T	G	S	I	Y	P	T	V	K	P	Y	H	Y	P	K	A	G	S	E
Template Known Secondary structure											B	T	T	T													T	T	S	S	S	S							T	T	S	S										T	T	S									S	S	S	S	S										B	T	T	S
Template Predicted Secondary structure
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
						269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.								290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure		.	.	.	.																						.	.	.	.	.	.	.																							.																							.	.	.
Query SS confidence		.	.	.	.																						.	.	.	.	.	.	.																							.																							.	.	.
Query Sequence		.	.	.	.	N	L	Y	V	M	D	L	A	S	G	Q	I	R	Q	V	T	D	G	R	S	N	.	.	.	.	.	.	.	N	T	E	P	T	W	F	P	D	S	Q	N	L	A	F	T	S	D	Q	A	G	R	.	P	Q	V	Y	K	V	N	I	N	G	G	A	P	Q	R	I	T	W	E	G	S	Q	.	.	.
Query Conservation		.	.	.	.																						.	.	.	.	.	.	.																							.																							.	.	.
Alig confidence		.	.	.	.																						.	.	.	.	.	.	.																							.																							.	.	.
Template Conservation
Template Sequence		N	P	S	I	S	L	H	V	I	G	L	N	G	P	T	H	D	L	E	M	M	P	P	D	D	P	R	M	R	E	Y	Y	I	T	M	V	K	W	A	T	S	T	K	V	A	V	T	W	L	N	R	A	Q	N	V	S	I	L	T	L	C	D	A	T	T	G	V	C	T	K	K	H	E	D	E	S	E	A	W	L
Template Known Secondary structure												S	S	S	S												G	G	G	S	S									S	S	S	S									T	T	S										T	T	T												S	S
Template Predicted Secondary structure
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
					334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.			.	.	.	.	.	.	.	.	360	.	.								.	.	.	.	.	.	.	370	.	.	.	.	.	.	.			.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.			.
Predicted Secondary structure		.	.	.																			.	.												.	.	.	.	.	.	.																.	.																				.	.
Query SS confidence		.	.	.																			.	.												.	.	.	.	.	.	.																.	.																				.	.
Query Sequence		.	.	.	N	Q	D	A	D	V	S	S	D	G	K	F	M	V	M	V	S	S	.	.	N	G	G	Q	Q	H	I	A	K	Q	D	.	.	.	.	.	.	.	L	A	T	G	G	V	Q	V	L	S	S	T	F	L	D	.	.	E	T	P	S	L	A	P	N	G	T	M	V	I	Y	S	S	S	Q	G	.	.	M
Query Conservation		.	.	.																			.	.												.	.	.	.	.	.	.																.	.																				.	.
Alig confidence		.	.	.																			.	.												.	.	.	.	.	.	.																.	.																				.	.
Template Conservation
Template Sequence		H	R	Q	N	E	E	P	V	F	S	K	D	G	R	K	F	F	F	I	R	A	I	P	Q	G	G	R	G	K	F	Y	H	I	T	V	S	S	S	Q	P	N	S	S	N	D	N	I	Q	S	I	T	S	G	D	W	D	V	T	K	I	L	A	Y	D	E	K	G	N	K	I	Y	F	L	S	T	E	D	L	P	R
Template Known Secondary structure												T	T	S		S										S	S	S	S										S	S			S	S	S					B	S			S	S	S										T	T	T	T							S	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.					.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.
Query SS confidence																							.	.	.	.
Query Sequence		G	S	V	L	N	L	V	S	T	D	G	R	F	K	A	R	L	P	A	T	D	.	.	.	.	G	Q	V	K	F	P	A	W	S	P
Query Conservation																							.	.	.	.
Alig confidence																							.	.	.	.
Template Conservation
Template Sequence		R	R	Q	L	Y	S	A	N	T	V	G	N	F	N	R	Q	C	L	S	C	D	L	V	E	N	C	T	Y	F	S	A	S	F	S	H
Template Known Secondary structure										S	S	T	T				B		S	S	T	T	S	S	S	S										T
Template Predicted Secondary structure
Template SS confidence
		511	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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