Job Description P0A855 Confidence 99.59% Date Thu Jan 5 11:06:56 GMT 2012 Rank 80 Aligned Residues 239 % Identity 10% Template c1vyhT_ PDB info PDB header:hydrolase Chain: T: PDB Molecule:platelet-activating factor acetylhydrolase ib PDBTitle: paf-ah holoenzyme: lis1/alfa2 Resolution 3.4 Å

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		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		V	S	D	Y	D	G	Y	N	Q	F	V	V	H	R	S	P	Q	P	L	M	S	P	A	W	S	P	D	G	S	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G	A	.	V	R	Q	V	A	S	F	P	R	H	N	G	A	P	A	F	S	P	D	G	S	K	L	A	F	A	L
Query Conservation																																																						.
Alig confidence																																								.	.	.												.
Template Conservation																																								.	.	.
Template Sequence		E	W	I	P	R	P	P	E	K	Y	A	L	S	G	H	R	S	P	V	T	R	V	I	F	H	P	V	F	S	V	M	V	S	A	S	E	D	A	.	.	.	T	I	K	V	W	D	Y	E	T	G	D	F	E	R	T	L	K	G	H	T	D	S	V	Q	D	I	S	F	D	H	S	G	K	L	L	A	S	C	S
Template Known Secondary structure							S	S		S							S	S									S	S	S	S							S	S	S	.	.	.							T	T	T											S	S									T	T	S	S
Template Predicted Secondary structure																																								.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130				.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		263	.	.	.	.	.	.																																																			270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	K	T	G	S	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Y	V	M	D	L	A	S	G	Q	I	R	Q	V	T	D	G	R	S	N	N	T	E
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	D	M	T	I	K	L	W	D	F	Q	G	F	E	C	I	R	T	M	H	G	H	D	H	N	V	S	S	V	S	I	M	P	N	G	D	H	I	V	S	A	S	R	D	K	T	I	K	M	W	E	V	Q	T	G	Y	C	V	K	T	F	T	G	H	R	E	W	V	R	M	V	R	P	N	Q	D	G	T	L	I
Template Known Secondary structure		T	T	S							T	T	S	S										S	S									S	S	S	S							T	T	T							T	T	T											S	S									T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	W	F	P	D	S	Q	N	L	A	F	T	S	D	Q	A	G	R	P	Q	V	Y	K	V	N	I	N	G	G	A	P	Q	R	I	T	W	E	G	S	Q	N	Q	D	A	D	V	S	S	D	G	K	F	M	V	M	V	S	S	N	G	G	Q	Q	H	I	A	K	Q	D	L	A	T	G	G	V	Q	V	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	S	C	S	N	D	Q	T	V	R	V	W	V	V	A	T	K	E	C	K	A	E	L	R	E	H	R	H	V	V	E	C	I	S	W	A	P	E	S	S	Y	S	S	I	S	E	A	T	G	S	E	G	P	F	L	L	S	G	S	R	D	K	T	I	K	M	W	D	V	S	T	G	M	C	L	M	T	L	V	G
Template Known Secondary structure						T	T	S							T	T	T											S	S		B					B			S		G	G	G	G	G	G	G			S										B	S	S	S							T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.		.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		S	T	F	L	D	E	T	P	S	L	A	P	N	G	T	M	V	I	Y	S	S	S	Q	G	M	G	S	V	L	N	L	V	S	T	.	D	G	R	F	K	A	R	L	P	A	T	D	G	Q	V	K	F	P	A	W	S	P
Query Conservation																																				.
Alig confidence																										.	.	.								.
Template Conservation																										.	.	.
Template Sequence		H	D	N	W	V	R	G	V	L	F	H	S	G	G	K	F	I	L	S	C	A	D	D	K	.	.	.	T	L	R	V	W	D	Y	K	N	K	R	C	M	K	T	L	N	A	H	E	H	F	V	T	S	L	D	F	H	K
Template Known Secondary structure			S	S									S	S	S	S							S	S	S	.	.	.								S	T	T										S	S									S
Template Predicted Secondary structure																										.	.	.
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360				.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions