Job Description P0A855 Confidence 99.72% Date Thu Jan 5 11:06:56 GMT 2012 Rank 55 Aligned Residues 230 % Identity 17% Template c1r5mA_ PDB info PDB header:transcription Chain: A: PDB Molecule:sir4-interacting protein sif2; PDBTitle: crystal structure of the c-terminal wd40 domain of sif2 Resolution 1.55 Å

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		190	.	.	.	.	.	.	.	.	.			200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.										.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure												.	.											.																														.	.	.	.	.	.	.	.	.
Query SS confidence												.	.											.																														.	.	.	.	.	.	.	.	.
Query Sequence		Y	N	Q	F	V	V	H	R	S	P	.	.	Q	P	L	M	S	P	A	W	S	P	.	D	G	S	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G	A	V	R	Q	.	.	.	.	.	.	.	.	.	V	A	S	F	P	R	H	N	G	A	P	A	F	S	P	D	G	S	K
Query Conservation												.	.											.																														.	.	.	.	.	.	.	.	.
Alig confidence												.	.											.													.	.	.															.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.
Template Sequence		G	F	V	K	I	L	K	E	I	V	K	L	D	N	I	V	S	S	T	W	N	P	L	D	E	S	I	L	A	Y	G	E	K	N	S	.	.	.	V	A	R	L	A	R	I	V	E	T	Y	W	K	L	T	I	I	A	E	L	R	H	P	F	A	L	S	T	N	Q	V	T	C	L	A	W	S	H	D	G	N	S
Template Known Secondary structure														S			S						S	S		T	T							T	B	T	.	.	.																													B									T	T	S	S
Template Predicted Secondary structure																																					.	.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180				.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	F	A	L	S	K	T	G	S	L	N	L	Y	V	M	D	L	A	S	G	Q	I	R	Q	V	T	D	G	R	S	N	N	T	E	P	T	W	F	P	D	S	Q	N	L	A	F	T	S	D	Q	A	G	R	P	Q	V	Y	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.
Template Sequence		I	V	.	.	.	T	G	V	E	N	G	E	L	R	L	W	N	K	T	G	A	L	L	N	V	L	N	F	H	R	A	P	I	V	S	V	K	W	N	K	D	G	T	H	I	I	S	M	D	V	E	N	V	T	I	L	W	N	V	I	S	G	T	V	M	Q	H	F	E	L	K	G	S	L	G	V	D	V	E	W
Template Known Secondary structure				.	.	.				T	T	S							T	T	S											S									T	T	S	S							T	T								T	T	T	T													B	S
Template Predicted Secondary structure				.	.	.
Template SS confidence
		235	.				.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
																																																												317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	N	I	N	G	G	A	P	Q	R	I	T	W	E	G	S	Q	N	Q	D	A	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	D	D	D	K	F	V	I	P	G	P	K	G	A	I	F	V	Y	Q	I	T	E	K	T	P	T	G	K	L	I	G	H	H	G	P	I	S	V	L	E	F	N	D	T	N	K	L	L	L	S	A	S	D	D	G	T	L	R	I	W	H	G	G	N	G	N	S	Q	N	C	F	Y	G	H	S	Q	S	I	V	S
Template Known Secondary structure				T	T							G	G	G							T	T		S	S		S							S	S									T	T	T	T							T	T	S							S	S	S	B	S		S							S	S
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.		.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		V	S	S	D	G	K	F	M	V	M	V	S	S	N	G	G	Q	Q	H	I	A	K	Q	D	L	A	T	G	G	V	Q	V	L	S	S	T	F	L	D	E	T	P	S	L	A	P	N	G	T	M	V	I	Y	S	S	S	Q	G	M	G	S	V	L	N	L	V	S	T	.	D	G	R	F	K	A	R	L	P	A	T
Query Conservation																																																																						.
Alig confidence																																																												.	.	.								.
Template Conservation																																																												.	.	.
Template Sequence		A	S	W	V	G	D	D	K	V	I	S	C	S	M	D	G	S	V	R	L	W	S	L	K	Q	N	T	L	L	A	L	S	I	V	D	G	V	P	I	F	A	G	R	I	S	Q	D	G	Q	K	Y	A	V	A	F	M	D	G	.	.	.	Q	V	N	V	Y	D	L	K	K	L	N	S	P	L	P	I	P	L	Y
Template Known Secondary structure						T	T	T							T	T	S							T	T	T	T									T	T										T	T	S	S							T	T	S	.	.	.
Template Predicted Secondary structure																																																												.	.	.
Template SS confidence
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.				.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
										418	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	D	G	Q	V	K	F	P	A	W	S	P
Query Conservation		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	Y	Q	S	S	Q	D	N	D	Y	I	F	D	L	S	W	N	C
Template Known Secondary structure							T	T												T
Template Predicted Secondary structure
Template SS confidence
		498	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions