Job Description P0A855 Confidence 99.83% Date Thu Jan 5 11:06:56 GMT 2012 Rank 27 Aligned Residues 248 % Identity 12% Template c1gq1B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome cd1 nitrite reductase; PDBTitle: cytochrome cd1 nitrite reductase, y25s mutant, oxidised2 form Resolution 1.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.							.
Predicted Secondary structure																																																																											.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.
Query Sequence		Y	V	V	Q	T	N	G	G	Q	F	P	Y	E	L	R	V	S	D	Y	D	G	Y	N	Q	F	V	V	H	R	S	P	Q	P	L	M	S	P	A	W	S	P	D	G	S	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G	A	V	R	Q	V	A	S	.	.	.	.	.	.	F
Query Conservation																																																																											.	.	.	.	.	.
Alig confidence											.	.	.																																										.	.	.																		.	.	.	.	.	.
Template Conservation											.	.	.																																										.	.	.
Template Sequence		F	S	V	T	L	R	D	A	G	.	.	.	Q	I	A	L	I	D	G	A	T	Y	E	I	K	S	V	L	D	T	G	Y	A	V	H	I	S	R	L	S	A	S	G	R	Y	L	F	V	I	G	R	D	G	.	.	.	K	V	N	M	I	D	L	W	M	K	E	P	T	T	V	A	E	I	K	I	G	S	E	A
Template Known Secondary structure							T	T	T	T	.	.	.							T	T	T										S	S									T	T	S								T	T	S	.	.	.							T	T	S	S	S											S
Template Predicted Secondary structure											.	.	.																																										.	.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.				.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.				.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.													.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	R	H	N	G	A	P	A	F	S	P	D	G	S	K	L	A	F	A	L	S	K	T	G	S	L	N	L	Y	V	M	D	L	A	S	G	Q	I	R	Q	V	T	D	G	.	.	.	.	.	.	.	.	.	.	.	.	R	S	N	N	T	E	P	T	W	F	P	D	S	Q	N	L	A	F	T	S	D	Q	A	G
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.
Template Sequence		R	S	I	E	T	S	K	M	E	G	W	E	D	K	Y	A	I	A	G	A	Y	W	P	P	.	.	Q	Y	V	I	M	D	G	E	T	L	E	P	K	K	I	Q	S	T	R	G	M	T	Y	D	E	Q	E	Y	H	P	E	P	R	V	A	A	I	L	A	S	H	Y	R	P	E	F	I	V	N	V	K	E	T	G
Template Known Secondary structure									S	T	T		T	T	T									T	T	.	.							T	T	T														T	T	T					S											S	S	S	S							T	T	T	T
Template Predicted Secondary structure																										.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.								.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.
Query Sequence		R	P	Q	V	Y	K	V	N	I	N	G	G	A	P	Q	R	I	T	W	E	G	S	Q	N	Q	D	A	D	V	S	S	D	G	K	F	M	V	M	V	S	S	N	G	G	Q	Q	H	I	A	K	Q	D	L	A	T	G	G	V	Q	V	L	S	.	.	.	.	.	.	.	S	T	F	L	D	E	T	P	S	L	A
Query Conservation																																																																.	.	.	.	.	.	.
Alig confidence																																														.	.																	.	.	.	.	.	.	.
Template Conservation																																														.	.
Template Sequence		K	I	L	L	V	D	Y	T	D	L	D	N	L	K	T	T	E	I	S	A	E	R	F	L	H	D	G	G	L	D	G	S	H	R	Y	F	I	T	A	A	N	A	R	N	.	.	K	L	V	V	I	D	T	K	E	G	K	L	V	A	I	E	D	T	G	G	Q	T	P	H	P	G	R	G	A	N	F	V	H	P
Template Known Secondary structure								T	T		S	S	S										T	T								T	T	S								G	G	G	T	.	.							T	T	T	T									S	S	S	S	B			T	T							T
Template Predicted Secondary structure																																														.	.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.			.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.									.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.
Query Sequence		P	N	G	T	M	V	I	Y	S	S	S	Q	G	M	G	S	V	L	N	L	V	S	T	D	.	.	.	.	.	.	.	.	G	R	F	K	A	R	L	P	A	T	D	G	Q	V	K	F	P	A	W	S	P
Query Conservation																										.	.	.	.	.	.	.	.
Alig confidence															.	.										.	.	.	.	.	.	.	.
Template Conservation															.	.
Template Sequence		T	F	G	P	V	W	A	T	S	H	M	G	D	.	.	D	S	V	A	L	I	G	T	D	P	E	G	H	P	D	N	A	W	K	I	L	D	S	F	P	A	L	G	G	G	S	L	F	I	K	T	H	P
Template Known Secondary structure		T	T								B	S	S	S	.	.	S									T	T	T	S	T	T	T	B	T	S								S		S									T
Template Predicted Secondary structure															.	.
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.			.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions