Job Description P31224 Confidence 100.00% Date Thu Jan 5 11:47:22 GMT 2012 Rank 2 Aligned Residues 999 % Identity 20% Template c3k07A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:cation efflux system protein cusa; PDBTitle: crystal structure of cusa Resolution 3.52 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	P	N	F	F	I	D	R	P	I	F	A	W	V	I	A	I	I	I	M	L	A	G	G	L	A	I	L	K	L	P	V	A	Q	Y	P	T	I	A	P	P	A	V	T	I	S	A	S	Y	P	G	A	D	A	K	T	V	Q	D	T	V	T	Q	V	I	E	Q	N	M	N	G	I	D	N	L	M	Y	M	S	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	I	R	R	S	V	A	N	R	F	L	V	L	M	G	A	L	F	L	S	I	W	G	T	W	T	I	I	N	T	P	V	D	A	L	P	D	L	S	D	V	Q	V	I	I	K	T	S	Y	P	G	Q	A	P	Q	I	V	E	N	Q	V	T	Y	P	L	T	T	T	M	L	S	V	P	G	A	K	T	V	R	G
Template Known Secondary structure									T																						S				S	S															S	S										T							T	T	T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	D	S	T	G	T	V	Q	I	T	L	T	F	E	S	G	T	D	A	D	I	A	Q	V	Q	V	Q	N	K	L	Q	L	A	M	P	L	L	P	Q	E	V	Q	Q	Q	G	V	S	V	E	K	S	S	S	S	F	L	M	V	V	G	V	I	N	T	D	G	T	M	T	Q	E	D	I	S	D	Y	V	A	A
Query Conservation
Alig confidence				.																																																				.
Template Conservation				.																																																				.
Template Sequence		F	S	.	Q	F	G	D	S	Y	V	Y	V	I	F	E	D	G	T	D	P	Y	W	A	R	S	R	V	L	E	Y	L	N	Q	V	Q	G	K	L	P	A	G	V	S	A	E	L	G	P	D	A	T	G	V	G	.	W	I	Y	E	Y	A	L	V	D	R	S	G	K	H	D	L	A	D	L	R	S	L	Q	D	W
Template Known Secondary structure				.		S	S										S	S			T	T															T	T	S		S	S								S			G	G	G	.										T	T	S		S
Template Predicted Secondary structure				.																																																				.
Template SS confidence
		85	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		N	M	K	D	A	I	S	R	T	S	G	V	G	D	V	Q	L	F	G	S	.	Q	Y	A	M	R	I	W	M	N	P	N	E	L	N	K	F	Q	L	T	P	V	D	V	I	T	A	I	K	A	Q	N	A	Q	V	A	A	G	Q	L	G	G	T	P	P	V	K	G	Q	Q	L	N	A	S	I	I	A	Q	T	R
Query Conservation																						.
Alig confidence																						.																																								.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.
Template Sequence		F	L	K	Y	E	L	K	T	I	P	D	V	A	E	V	A	S	V	G	G	V	V	K	E	Y	Q	V	V	I	D	P	Q	R	L	A	Q	Y	G	I	S	L	A	E	V	K	S	A	L	D	A	S	N	Q	E	A	G	G	S	S	I	.	.	.	.	.	.	E	L	A	E	A	E	Y	M	V	R	A	S	G	Y
Template Known Secondary structure		T						T	T	S	T	T									S																	T	T												T	S	S									.	.	.	.	.	.			T	T
Template Predicted Secondary structure																																																														.	.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.							.	.	.	.	.	.	.	230	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		L	T	S	T	E	E	F	G	K	I	L	L	K	V	N	Q	D	G	S	R	V	L	L	R	D	V	A	K	I	E	L	G	G	E	N	Y	D	I	I	A	E	F	N	G	Q	P	A	S	G	L	G	I	.	K	L	A	T	G	A	N	A	L	D	T	A	A	A	I	R	A	E	L	A	K	M	E	P	F	F	P
Query Conservation																																																						.
Alig confidence																																																						.
Template Conservation
Template Sequence		L	Q	T	L	D	D	F	N	H	I	V	L	K	A	S	E	N	G	V	P	V	Y	L	R	D	V	A	K	V	Q	I	G	P	E	M	R	R	G	I	A	E	L	N	G	E	G	E	V	A	G	G	V	V	I	L	R	S	G	K	N	A	R	E	V	I	A	A	V	K	D	K	L	E	T	L	K	S	S	L	P
Template Known Secondary structure				S						T							T	T	S					G	G	G	T											S						T	T	T												T	T	S																	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	L	K	I	V	Y	P	Y	D	T	T	P	F	V	K	I	S	I	H	E	V	V	K	T	L	V	E	A	I	I	L	V	F	L	V	M	Y	L	F	L	Q	N	F	R	A	T	L	I	P	T	I	A	V	P	V	V	L	L	G	T	F	A	V	L	A	A	F	G	F	S	I	N	T	L	T	M	F	G	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	G	V	E	I	V	T	T	Y	D	R	S	Q	L	I	D	R	A	I	D	N	L	S	G	K	L	L	E	E	F	I	V	V	A	V	V	C	A	L	F	L	W	H	V	R	S	A	L	V	A	I	I	S	L	P	L	G	L	C	I	A	F	I	V	M	H	F	Q	G	L	N	A	N	I	M	S	L	G	G	I
Template Known Secondary structure		T	T									T																																									T																	T
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.											.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	A	I	G	L	L	V	D	D	A	I	V	V	V	E	N	V	E	R	V	M	A	E	.	.	.	.	.	.	.	.	.	.	E	G	L	P	P	K	E	A	T	R	K	S	M	G	Q	I	Q	G	A	L	V	G	I	A	M	V	L	S	A	V	F	V	P	M	A	F	F	G	G	S	T	G	A	I	Y	R
Query Conservation																										.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	I	A	V	G	A	M	V	D	A	A	I	V	M	I	E	N	A	H	K	R	L	E	E	W	Q	H	Q	H	P	D	A	T	L	D	N	K	T	R	W	Q	V	I	T	D	A	S	V	E	V	G	P	A	L	F	I	S	L	L	I	I	T	L	S	F	I	P	I	F	T	L	E	G	Q	E	G	R	L	F	G
Template Known Secondary structure																														S		S	S																		S																G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
		469	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F	S	I	T	I	V	S	A	M	A	L	S	V	L	V	A	L	I	L	T	P	A	L	C	A	T	M	L	K	P	I	A	K	G	D	H	G	E	G	K	K	G	F	F	G	W	F	N	R	M	F	E	K	S	T	H	H	Y	T	D	S	V	G	G	I	L	R	S	T	G	R	Y	L	V	L	Y	L	I	I
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	L	A	F	T	K	T	Y	A	M	A	G	A	A	L	L	A	I	V	V	I	P	I	L	M	G	Y	W	P	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	F	L	I	R	V	Y	H	P	L	L	L	K	V	L	H	W	P	K	T	T	L	L	V	A	A	L	S
Template Known Secondary structure																					T												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.																						.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
		549	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.		.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence		V	V	G	M	A	Y	L	F	V	R	L	P	S	S	F	L	P	D	E	D	Q	G	V	F	M	T	M	V	Q	L	P	A	G	A	T	Q	E	R	T	Q	K	V	L	N	E	V	T	H	Y	Y	L	T	K	E	K	N	.	N	V	E	S	V	F	A	V	N	G	F	G	F	A	G	R	G	Q	N	T	G	I	A
Query Conservation																																																										.
Alig confidence																																																										.
Template Conservation
Template Sequence		V	L	T	V	L	W	P	L	N	K	V	G	G	E	F	L	P	Q	I	N	E	G	D	L	L	Y	M	P	S	T	L	P	G	I	S	A	A	E	A	A	S	M	L	Q	K	T	D	K	L	I	M	S	V	P	E	V	A	R	V	F	G	K	T	G	K	A	E	T	A	T	D	S	A	P	L	E	M	V	E	T
Template Known Secondary structure				T	T					T	T					S	S						S										S																			T	T	S	T	T												S	S	T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		547	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.
		628	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	S	L	K	D	W	A	D	R	P	G	E	E	N	K	V	E	A	I	T	M	R	A	T	R	A	F	S	Q	I	K	D	A	M	V	F	A	F	N	L	P	A	I	V	E	L	G	T	A	T	G	F	D	F	E	L	I	D	Q	A	G	L	G	H	E	K	L	T	Q	A	R	N	Q	L	L	A	E	A	A
Query Conservation
Alig confidence																.
Template Conservation																.
Template Sequence		T	I	Q	L	K	P	Q	E	Q	W	R	P	G	M	.	T	M	D	K	I	I	E	E	L	D	N	T	V	R	L	P	G	L	A	N	L	W	V	P	P	I	R	N	R	I	D	M	L	S	T	G	I	K	S	P	I	G	I	K	V	S	G	T	V	L	A	D	I	D	A	M	A	E	Q	I	E	E	V	A	R
Template Known Secondary structure								G	G	G	S		S	S		.																T	T																T	T	T	S		S	S	S								S	S	T	T														T
Template Predicted Secondary structure																.
Template SS confidence
		627	.	.	630	.	.	.	.	.	.	.	.	.	640		.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.
		708	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	H	P	D	M	L	T	S	V	R	P	N	G	L	E	D	T	P	Q	F	K	I	D	I	D	Q	E	K	A	Q	A	L	G	V	S	I	N	D	I	N	T	T	L	G	A	A	W	G	G	S	Y	V	N	D	F	I	D	R	G	R	V	K	K	V	Y	V	M	S	E	A	K	Y	R	M	L	P	D	D	I	G
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence		T	V	P	.	G	V	A	S	A	L	A	E	R	L	E	G	G	R	Y	I	N	V	E	I	N	R	E	K	A	A	R	Y	G	M	T	V	A	D	V	Q	L	F	V	T	S	A	V	G	G	A	M	V	G	E	T	V	E	G	I	A	R	Y	P	I	N	L	R	Y	P	Q	S	W	R	D	S	P	Q	A	L	R
Template Known Secondary structure		T	S	S	.	S		S							T	T	B																T	T												T	T	T	T										T	T											G	G	G	G	S	S
Template Predicted Secondary structure					.
Template SS confidence
		706	.	.		.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.
		788	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850			.	.	.	.	.	.	.	.	.	860	.	.	.	.	.
Predicted Secondary structure																																																																	.	.
Query SS confidence																																																																	.	.
Query Sequence		D	W	Y	V	R	A	A	D	G	Q	M	V	P	F	S	A	F	S	S	S	R	W	E	Y	G	S	P	R	L	E	R	Y	N	G	L	P	S	M	E	I	L	G	Q	A	A	P	G	K	S	T	G	E	A	M	E	L	M	E	Q	L	A	S	K	.	.	L	P	T	G	V	G	Y	D	W	T	G	M	S	Y	Q
Query Conservation																																																																	.	.
Alig confidence																																																																	.	.
Template Conservation
Template Sequence		Q	L	P	I	L	T	P	M	K	Q	Q	I	T	L	A	D	V	A	D	I	K	V	S	T	G	P	S	M	L	K	T	E	N	A	R	P	T	S	W	I	Y	I	D	A	R	D	R	D	M	V	S	V	V	H	D	L	Q	K	A	I	A	E	K	V	Q	L	K	P	G	T	S	V	A	F	S	G	Q	F	E	L
Template Known Secondary structure								T	T																			S						T	T											S	S	S																					T	T
Template Predicted Secondary structure
Template SS confidence
		785	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.
		866	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	L	S	G	N	Q	A	P	S	L	Y	A	I	S	L	I	V	V	F	L	C	L	A	A	L	Y	E	S	W	S	I	P	F	S	V	M	L	V	V	P	L	G	V	I	G	A	L	L	A	A	T	F	R	G	L	T	N	D	V	Y	F	Q	V	G	L	L	T	T	I	G	L	S	A	K	N	A	I	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E	R	A	N	H	K	L	K	L	M	V	P	M	T	L	M	I	I	F	V	L	L	Y	L	A	F	R	R	V	G	E	A	L	L	I	I	S	S	V	P	F	A	L	V	G	G	I	W	L	L	W	W	M	G	F	H	L	S	V	A	T	G	T	G	F	I	A	L	A	G	V	A	A	E	F	G	V	V	M
Template Known Secondary structure											T																		S										T	T															T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		865	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.
		946	.	.	.	950	.	.	.	.											.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.
Query Sequence		V	E	F	A	K	D	L	M	D	.	.	.	.	.	.	.	.	.	.	K	E	G	K	G	L	I	E	A	T	L	D	A	V	R	M	R	L	R	P	I	L	M	T	S	L	A	F	I	L	G	V	M	P	L	V	I	S	T	G	A	G	S	G	A	Q	N	A	V	G	T	G	V	M	G	G	M	V	T	A	T
Query Conservation											.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	M	Y	L	R	H	A	I	E	A	V	P	S	L	N	N	P	Q	T	F	S	E	Q	K	L	D	E	A	L	Y	H	G	A	V	L	R	V	R	P	K	A	M	T	V	A	V	I	I	A	G	L	L	P	I	L	W	G	T	G	A	G	S	E	V	M	S	R	I	A	A	P	M	I	G	G	M	I	T	A	P
Template Known Secondary structure												S	S	G	G	G		S	S	S	S		S	T	T	T							T	T	T	T	T														T	T	S							S	S	S
Template Predicted Secondary structure
Template SS confidence
		945	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.
		1016	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	A	I	F	F	V	P	V	F	F	V	V	V	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	S	L	F	I	I	P	A	A	Y	K	L	M	W
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		1025	.	.	.	.	1030	.	.	.	.	.	.	.	.	.