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Job DescriptionP31224
Confidence100.00%DateThu Jan 5 11:47:22 GMT 2012
Rank3Aligned Residues675
% Identity18%Templatec3aqpB_
PDB info PDB header:membrane proteinChain: B: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus
Resolution3.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   86...90.........100.........110.........120.........130.........140.........150.........160.....
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Query Sequence  GTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDA
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Template Sequence  GGLRIVLEADVENPTLDDLEKARTVLENRIN. . ALGVAEPLIQIQGQKRIVVELPGL. . . . SQADQDRALKLIGQRAVLE
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   41........50.........60.........70. ........80.........90..... ....100.........110....
 
   166... 170.........180 .........190.........200.........210.........220.........230.........240..
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Query Sequence  ISRT. . SGVGDVQLFGS. QYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQQLNASIIAQTRLTS
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Template Sequence  FRIVKEGATGTTVAQINQALRENPRLNREELEKDLIKPEDLGPPLLTGADLADARAV. . . . . . FDQFGRPQVSLTFTPEG
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   115....120.........130.........140.........150.........160.........170. ........180........
 
   243......250.........260.........270.........280.........290.........300.........310.........320..
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Query Sequence  TEEFGKILLKVNQDGSRVLLRDVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLK
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Template Sequence  AKKFEEVTRQNIG. . . . KRLAIVLDGRVYTAPVIRQAITGGQAVI. . . . . . . EGLSSVEEASEIALVLRS. . GSLPVPLK
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   189190.........200. ........210.........220......... 230.........240....... ..250.....
 
   323......330... ......340.........350.........360.........370.........380.........390.........400.
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Query Sequence  IVYPYDTTPFV. KISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLA
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Template Sequence  VAEIRAIGPTLGQDAIQAGIRSALIGTLAIFLLIFAYYG. PHLGLVASLGLLYTSALILGLLSGLGATLTLPGIAGLVLT
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   256...260.........270.........280.........290.... .....300.........310.........320.........330....
 
   402.......410.........420.........430.........440.........450.........460.........470.........480.
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Query Sequence  IGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALS
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Template Conservation 

  

  
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Template Sequence  LGAAVDGNVLSFERIKEEL. RAGKKLRQAIPEGFRHSTLTIMDVNIAHLLAAAALYQYATGP. . . VRGFAVILAIGVVAS
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   335....340.........350... ......360.........370.........380.........390..... ....400.........410
 
   482.......490.........500.........510.........520.........530.........540.........550.........560.
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Query Sequence  VLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPS
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Template Conservation          
 
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Template Sequence  VFSNLVFSRHLLERLADRGEIRPPMWLVDPRFNF. . . . . . . . . . . . . . . . . . . MGPARYVTAATLLLAALAAGVVFAKGF
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ST...................TTTT
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   411........420.........430.........440.... .....450.........460.........470.
 
   562.......570.........580.........590.........600.........610.........620.........630.........640.
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Query Sequence  SFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPGEE
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Template Sequence  NYSIDFTGGT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   472.......480.
 
   642.......650.........660.........670.........680.........690.........700.........710.........720.
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Query Sequence  NKVEAITMRATRAFSQIKDAMVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLTQARNQLLAEAAKHPDMLTSVRPNGL
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   722.......730.........740.........750.........760.........770.........780.........790.........800.
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Query Sequence  EDTPQFKIDIDQEKAQALGVSINDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYRMLPDDIGDWYVRAADGQMVPF
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Template Sequence  . . . . AYTLRAEPN. . . . . . VEVETLRRFLEEKGFPGKEAVITQVYREFLVK. . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   482.......490 .........500.........510.........520..
 
   802.......810.........820.........830.........840.........850.........860.........870.........880.
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Query Sequence  SAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASKLPTGVGYDWTGMSYQERLSGNQAPSLYAISL
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Template Conservation  ..............................                                            

 


Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LPPLSDERRLELERLFASELKATVLASETVGPAIGEELRRNAVMAVLVGL
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   529530.........540.........550.........560.........570........
 
   882.......890.........900.........910.........920.........930.........940.........950..... ....960
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Query Sequence  IVVFLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDK. EGKGL
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Template Sequence  GLILLYVAFRF. DWTFGVASILAVAHDVAIVAGMYSLLGLEFSIPTIAALLTIVGYSINDSIVVSDRIRENQKLLRHLPY
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   579580......... 590.........600.........610.........620.........630.........640.........650.......
 
   961........970.........980.........990.........1000.........1010.........1020.........1030..
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Query Sequence  IEATLDAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVRRR
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Template Sequence  AELVNRSINQTLSRTVMTSLTTLLPILALLFLGGS. . . VLRDFALAIFVGIFVGTYSSIYVVSALVVAWKNR
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   658.660.........670.........680.........690.. .......700.........710.........720......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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