 |
Job Description | Q00037 | Confidence | 10.25% | Date | Thu Jan 5 12:33:19 GMT 2012 |
Rank | 85 | Aligned Residues | 48 |
% Identity | 31% | Template | c3bvhC_ |
PDB info |
PDB header:blood clotting | Chain: C: PDB Molecule:fibrinogen gamma chain; |
PDBTitle: crystal structure of recombinant gammad364a fibrinogen fragment d with2 the peptide ligand gly-pro-arg-pro-amide
|
Resolution | 2.60 Å |
|
 |
  |   |
687 | . | . | 690 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
700 | . | . | . | . | . | |
|
|
|
|
|
|
|
. | . | . | . | 710 | . | . | . | . | . | . | . | . | . | 720 | . | . | . | . | . | . | . | . | . | 730 | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | S | A | D | G | M | R | F | V | T | P | V | K | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
T | I | N | S | G | S | . |
. |
. |
. |
. |
. |
. |
. |
N | R | K | Y | F | G | S | G | R | G | I | T | W | Y | N | F | V | S | D | Q | Y | S | G | F | H | G | I | V |
Query Conservation |   |
|
|
|
|
|
|   |
|   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |
|   |   | . | . | . | . | . | . | . | . |   |   |
|
|   |
|   |   |   |
|
|   |   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |
|   |   |
|
|
|   |
|   |
|
|
|   |   |   |   |
|
|
|   |   |   |   |
|
|
|
|   |   |   |
|   |   |
|
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |   |
|   |
|   |   |   |
|
|
|   |   |   |
|
Template Sequence |   |
T | S | H | N | G | M | Q | F | S | T | W | D | N | D | N | D | K | F | E | G | N | C | A | E | Q | D | G | S | G | W | W | M | N | K | C | H | A | G | H | L | N | G | V | Y | Y | Q | G | G | T | Y | S | K | A | S | T | P | N | G | Y | A | N | G | I | I | W | A | T | W | K | T | R | W | Y | S | M | K | K | T | T | M |
Template Known Secondary structure |   |
T |
|
| T | T |
|
|
| B | B | T | T | B |
|
| S | S | S | S | S |
|  |  |  |  |  | T | S |
| B |
|
| S | S | S |
| S |  |  | T | T | S | B |
|
| T | T | S | B |
|
| T | T | T | S | S | S | S | S |
|
| B | S |  |  | T | T | T | S |
| T | T | B |
|
| S |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
305 | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . |
  |
  |   |
734 |
Predicted Secondary structure |   |
 |
Query SS confidence |   |
|
Query Sequence |   |
V |
Query Conservation |   |
|
Alig confidence |   |
|
Template Conservation |   |
  |
Template Sequence |   |
K |
Template Known Secondary structure |   |
 |
Template Predicted Secondary structure |   |
 |
Template SS confidence |   |
|
  |   |
385 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|