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Job DescriptionP15977
Confidence97.80%DateThu Jan 5 11:34:58 GMT 2012
Rank23Aligned Residues249
% Identity19%Templated2d3na2
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain
Resolution1.90

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   145....150.........160.........170.........180.........190.........200.........210.........220....
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Query Sequence  GACVQLYTLRSEKNWGIGDFGDLKAMLVDVAKRGGSFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNAVEDFHL
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Template Sequence  GTMMQYFEWYLPNDG. . NHWNRLNSDASNLKSKGITAVWIPPA. . . WKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYGT
Template Known Secondary structure 




TT

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T




...SSSTT

S
STT
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BTTBSSBTTB
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   7..10.........20. ........30.........40....... ..50.........60.........70.........80.
 
   225....230.........240.........250.........260.........270.........280.........290.........300....
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Query Sequence  SEEAQAWWQLPTTQQTLQQARDADWVDYSTVTALKMTALRMAWKGFAQRDDEQMAAFRQFVAEQGDSLFWQAAFDALHAQ
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Template Sequence  R. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   82
 
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Query Sequence  QVKEDEMRWGWPAWPEMYQNVDSPEVRQFCEEHRDDVDFYLWLQWLAYSQFAACWEISQGYEMPIGLYRDLAVGVAEGGA
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SQLQAAVTSLKNNG. . IQVYGDVVMNHKGGAD
Template Known Secondary structure  ................................................TT..


S
S
S
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   83......90...... ...100.........110..
 
   385 ....390.........400.........410...
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Query Sequence  E. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TWCDRELYCLKASVGAPPDILGPLGQNW. . . . . . .
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Template Sequence  ATEMVRAVEVNPNNRNQEVTGEYTIEAWTRFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLNNRIYKFRGHGKAWDWEVD
Template Known Secondary structure  TT
S

B

TTTTTSS



B
GGGS

TTT

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   113......120.........130.........140.........150.........160.........170.........180.........190..
 
   414.....420.........430.........440 .........450.........460.........470.........480..
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Query Sequence  . . . . . . . . . GLPPMDPHIITARAYEPFIELLRANMQ. . NCGALRIDHVMSMLRLWWIPYGETADQGAYVHYPVDDLLSIL
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Template Sequence  TENGNYDYLMYADIDMDHPEVVNE. . LRNWGVWYTNTLGLDGFRIDAVKHI. . . . . . . . . . . . . . . . . . . . KYSFTRDWI
Template Known Secondary structure 
TTS




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   193......200.........210...... ...220.........230.........240. ........250
 
   483......490.........500.........510.........520.. .......530.........540....
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Query Sequence  . . ALESKRHRCMVIGEDLGTVPVEIVGKLRSSGVYSYKVLYF. . . . . . . . . . . . . . . . ENDHEKTFRAPKAYPEQSMAVA
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Template Sequence  NHVRSATGKNMFAVAEFWKNDLGAIENYLQKTN. WNHSVFDVPLHYNLYNASKSGGNYDMRNIFNGTVVQRHPSHAVTFV
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S
TT.T
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TTT
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GGGTTTT

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   251........260.........270.........280... ......290.........300.........310.........320.........
 
   545....550
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Query Sequence  ATHDLP
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Template Sequence  DNHDSQ
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TTTS
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   330.....
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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