Job Description P15977 Confidence 48.30% Date Thu Jan 5 11:34:58 GMT 2012 Rank 128 Aligned Residues 120 % Identity 13% Template c1y9qA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, hth_3 family; PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.			.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.																														.	.	50	.	.	.
Predicted Secondary structure																				.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	L	D	N	A	A	L	A	A	G	I	S	P	N	Y	I	N	A	.	.	H	G	K	P	Q	S	I	S	A	E	T	K	R	R	L	L	D	A	M	H	Q	R	T	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	V	A	V	T	P
Query Conservation																				.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.				.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.
Template Sequence		S	L	D	A	T	A	Q	L	T	G	V	S	K	A	X	L	G	Q	I	E	R	G	E	.	S	S	P	T	I	A	T	L	W	K	I	A	S	G	L	E	A	S	F	S	A	F	F	A	N	D	P	Q	L	L	S	S	E	R	S	F	P	D	D	L	N	X	K	I	H	T	L	F	P	Y	A	A	D	T	G	L
Template Known Secondary structure											S	S										T	T		.	S															T			S	G	G	G	G	T	T	S	T								B		T	T		T	T											T	T	T	T
Template Predicted Secondary structure																									.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.						.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.
Query SS confidence																																					.	.	.	.	.
Query Sequence		V	P	N	V	M	V	Y	T	S	G	K	K	M	P	M	V	V	E	G	S	G	E	Y	S	W	L	L	T	T	E	E	G	T	Q	Y	.	.	.	.	.	K	G	H	V	T	G	G	K	A	F	N	L	P	T	K	L	P	E	G	Y	H	T	L	T	L	T	Q	D	D	Q	R	A	H	C	R	V	I	V	A	P
Query Conservation																																					.	.	.	.	.
Alig confidence																																					.	.	.	.	.																								.	.	.	.
Template Conservation																																																																	.	.	.	.
Template Sequence		E	I	F	E	I	T	L	L	D	H	H	Q	Q	X	S	S	P	H	A	L	G	V	I	E	Y	I	H	V	L	E	G	I	X	K	V	F	F	D	E	Q	W	H	E	L	Q	Q	G	E	H	I	R	F	F	S	D	Q	P	H	G	Y	A	A	V	.	.	.	.	T	E	K	A	V	F	Q	N	I	V	A	Y	P
Template Known Secondary structure										T	T									S	T	T										S							T	T							T	T								S	S	S						S	.	.	.	.	S	S
Template Predicted Secondary structure																																																																	.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.					.	.	170	.	.	.	.	.	.	.	.	.	180
		129
Predicted Secondary structure
Query SS confidence
Query Sequence		K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		181

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions