Return to main results Retrieve Phyre Job Id

Job DescriptionP0AGD1
Confidence100.00%DateThu Jan 5 11:28:47 GMT 2012
Rank19Aligned Residues140
% Identity26%Templated1f1ga_
SCOP infoImmunoglobulin-like beta-sandwich Cu,Zn superoxide dismutase-like Cu,Zn superoxide dismutase-like
Resolution1.35

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30.........40......... 50.........60. ........70.........80.........90.........100
Predicted Secondary structure 










..



.
































Query SS confidence 

























. .











.






































Query Sequence  VEMNLVTSQGVGQSIGSVTITETDKG. . LEFSPDLKALPP. GEHGFHIHAKGSCQPATKDGKASAAESAGGHLDPQNTGK
Query Conservation             
   
 
 
 
   
..
 
   
 



.
 

 



 
 

            




 

     
Alig confidence 






.

















..











.














........















Template Conservation    


  . 
   
 
 
 
 
      
 
   
 

   
    


  
    ........ 
 




 

     
Template Sequence  VQAVAVL. KGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATN. . . . . . . . GCVSAGPHFNPFKKTH
Template Known Secondary structure 
.B
SSS

SSTTS
S

SS
S



TT........TTGGG
SB

TT



Template Predicted Secondary structure 
.






















........







Template SS confidence 















































































   1...... ..10.........20.........30.........40.........50..... ....60.........70.
 
   101........110.........120.........130. ........140.........150... ......160.........170..
Predicted Secondary structure 




















..















....











Query SS confidence 






























. .





















. . . .


















Query Sequence  HEGPEGAGHLGDLPALVVNNDGKATDAVIAP. . RLKSLDEIKDKALMVHVGGDNM. . . . SDQPKPLGGGGERYACGVI
Query Conservation            





     
         .. 
     
 







  

 ....       
 

 






Alig confidence 






























..





















....


















Template Conservation            



 
     
       
  
 
 
  









   

        
   
 

 




 
Template Sequence  GAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPRPACGVI
Template Known Secondary structure 

TTSSSS
TT

TTS
SS

SSSTT

TTS
SS


TT
SSSTTTT





Template Predicted Secondary structure 





















































Template SS confidence 













































































   72.......80.........90.........100.........110.........120.........130.........140.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions