Job Description P30863 Confidence 100.00% Date Thu Jan 5 11:46:39 GMT 2012 Rank 32 Aligned Residues 252 % Identity 27% Template c3erpA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: structure of idp01002, a putative oxidoreductase from and essential2 gene of salmonella typhimurium Resolution 1.55 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.						.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40						.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.																												.	.	.	.	.																.														.
Query SS confidence															.	.	.	.	.																												.	.	.	.	.																.														.
Query Sequence		M	A	I	P	A	F	G	L	G	T	F	R	L	.	.	.	.	.	K	D	D	V	V	I	S	S	V	I	T	A	L	E	L	G	Y	R	A	I	D	T	A	Q	I	Y	D	.	.	.	.	.	N	E	A	A	V	G	Q	A	I	A	E	S	G	V	P	.	R	H	E	L	Y	I	T	T	K	I	W	I	E	.
Query Conservation															.	.	.	.	.																												.	.	.	.	.																.														.
Alig confidence															.	.	.	.	.																												.	.	.	.	.																.														.
Template Conservation
Template Sequence		V	K	L	P	A	I	S	L	G	L	W	H	N	F	G	D	T	T	R	V	E	N	S	R	A	L	L	Q	R	A	F	D	L	G	I	T	H	F	D	L	A	N	N	Y	G	P	P	P	G	S	A	E	C	N	F	G	R	I	L	Q	E	D	F	L	P	W	R	D	E	L	I	I	S	T	K	A	G	Y	T	M
Template Known Secondary structure						S						S	S	S		S	T	T	S															T	T								T	T		T	T	T	T	T														T	G	G	G	G	G	G								S	S
Template Predicted Secondary structure
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
									69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	N	L	S	K	D	K	L	I	P	S	L	K	E	S	L	Q	K	L	R	T	D	Y	V	D	L	T	L	I	H	W	P	S	P	N	D	E	V	S	V	E	E	F	M	Q	A	L	L	E	A	K	K	Q	G	L	T	R	E	I	G	I	S	N	F	T	I	P	L	M	E	K	A	I	A
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																			.	.
Template Conservation																																											.	.
Template Sequence		W	D	G	P	Y	G	D	W	G	S	R	K	Y	L	I	A	S	L	D	Q	S	L	K	R	M	G	L	E	Y	V	D	I	F	Y	H	H	R	P	D	P	E	.	.	T	P	L	K	E	T	M	K	A	L	D	H	L	V	R	H	G	K	A	L	Y	V	G	I	S	N	Y	P	A	D	L	A	R	Q	A	I	D
Template Known Secondary structure		S	S	S	T	T	S	S	T	T																	T		S									S			T	T	.	.	S															T	T	S								S
Template Predicted Secondary structure																																											.	.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.			.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		142	.			.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.			.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.													.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure				.	.																			.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.																			.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	V	.	.	G	A	E	N	I	A	T	N	Q	I	E	L	S	P	Y	L	Q	N	.	.	R	K	V	V	A	W	A	K	Q	H	G	I	H	I	T	S	Y	M	T	L	A	Y	G	K	A	L	K	D	E	V	.	.	.	.	.	.	.	.	.	.	.	.	I	A	R	I	A	A	K	H	N	A	T	P	A	Q
Query Conservation				.	.																			.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.																			.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	L	E	D	L	G	T	P	C	L	I	H	Q	P	K	Y	S	L	F	E	R	W	V	E	D	G	L	L	A	L	L	Q	E	K	G	V	G	S	I	A	F	S	P	L	A	G	G	Q	L	T	D	R	Y	L	N	I	T	A	D	K	L	E	K	V	R	R	L	N	E	L	A	A	R	R	G	Q	K	L	S	Q
Template Known Secondary structure							T									B		B	T	T	B		G	G	G	G	T									T						B	S	T	T	G	G	G	T	S	S	G	G	G	T																				T	T
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		206	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure												.	.																					.
Query SS confidence												.	.																					.
Query Sequence		V	I	L	A	W	A	M	G	E	G	.	.	Y	S	V	I	P	S	S	T	K	R	K	N	L	E	S	N	L	K	A	Q	.	N	L	Q	L	D	A	E	D	K	K	A	I	A	A	L	D	C	N	D
Query Conservation												.	.																					.
Alig confidence												.	.																					.
Template Conservation
Template Sequence		M	A	L	A	W	V	L	R	N	D	N	V	T	S	V	L	I	G	A	S	K	P	S	Q	I	E	D	A	V	G	M	L	A	N	R	R	F	S	A	A	E	C	A	E	I	D	A	I	L	E	G	R
Template Known Secondary structure								T	T	T	S										S	S										G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions