Job Description P77285 Confidence 100.00% Date Thu Jan 5 12:27:13 GMT 2012 Rank 1 Aligned Residues 162 % Identity 19% Template c3lwxA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nadh:ubiquinone oxidoreductase, na translocating, PDBTitle: crystal structure of na(+)-translocating nadh-quinone2 reductase subunit c (yp_001302508.1) from parabacteroides3 distasonis atcc 8503 at 1.10 a resolution Resolution 1.10 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.																							.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	M	T	K	T	T	I	A	E	Q	A	S	L	Q	Q	K	A	L	F	D	Q	V	L	P	A	E	R	Y	N	N	A	L	A	Q	S	C	Y	L	V	T	A	P	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	G	E	H	R	V	Y	I	A	K	Q	D	D
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	S	L	R	S	F	Q	K	Q	N	E	D	N	D	K	R	Q	Q	I	L	R	S	I	N	V	N	V	S	S	S	E	A	E	T	K	Y	N	E	L	I	K	E	A	F	L	V	N	E	N	G	E	K	V	E	G	D	A	F	A	T	D	V	V	K	A	A	T	E	H	Q	Y	P	V	F	V	A	N	V	D	G
Template Known Secondary structure																								T	T																								T	T	S				S	S		T	T	T	S								T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.								.	.	.	.
Predicted Secondary structure																															.																																								.	.	.	.	.	.	.
Query SS confidence																															.																																								.	.	.	.	.	.	.
Query Sequence		K	P	V	A	A	V	L	E	A	T	A	P	D	G	Y	S	G	A	I	Q	L	L	V	G	A	D	F	N	G	.	T	V	L	G	T	R	V	T	E	H	H	E	T	P	G	L	G	D	K	I	E	L	R	L	S	D	W	I	T	H	F	A	G	K	K	I	S	G	A	.	.	.	.	.	.	.	D	D	A	H
Query Conservation																															.																																								.	.	.	.	.	.	.
Alig confidence			.	.																											.																					.	.																		.	.	.	.	.	.	.
Template Conservation			.	.																																																.	.
Template Sequence		Q	.	.	P	K	Y	I	X	A	L	H	G	A	G	L	W	G	P	L	W	G	Y	I	S	V	D	S	D	K	N	T	I	Y	G	A	D	F	S	H	Q	G	E	T	P	G	L	G	A	E	I	.	.	S	K	P	V	F	S	N	E	F	K	G	K	K	I	F	X	S	G	E	F	K	S	V	A	V	V	K	P
Template Known Secondary structure			.	.												S	S	S										T	T	S	S	B									S	S			T	T	T	G	G	G	G	.	.	G	S					G	G	G	T	T		B	S			T	T									S	T
Template Predicted Secondary structure			.	.																																																.	.
Template SS confidence
		153			.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200			.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	A	V	K	K	D	G	G	D	F	D	Q	F	T	G	A	T	I	T	P	R	A	V	V	N	A	V	K	R	A	G	L	Y	A	Q	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	K	S	V	A	G	Q	D	Y	V	D	G	I	S	G	G	T	I	T	S	K	G	V	D	E	X	L	F	N	S	L	S	G	Y	V	K
Template Known Secondary structure		T				T	T	S							T	T
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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