Job Description P77285 Confidence 98.36% Date Thu Jan 5 12:27:13 GMT 2012 Rank 4 Aligned Residues 132 % Identity 21% Template c3dczA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:putative rnfg subunit of electron transport complex; PDBTitle: crystal structure of a putative rnfg subunit of electron transport2 complex (tm0246) from thermotoga maritima at 1.65 a resolution Resolution 1.65 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90													.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Q	Q	K	A	L	F	D	Q	V	L	P	A	E	R	Y	N	N	A	L	A	Q	S	C	Y	L	V	T	A	P	E	L	G	K	G	E	H	R	V	Y	I	A	K	Q	D	D	K	P	V	A	A	.	.	.	.	.	.	.	.	.	.	.	.	V	L	E	A	T	A	P	D	G	Y	S	G	A	I	Q	L	L
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	K	L	S	A	I	K	F	V	L	K	D	P	L	T	G	D	Y	L	V	D	E	K	E	I	E	E	I	V	K	K	T	G	I	E	T	V	V	L	K	E	Y	K	E	G	V	V	L	G	P	L	Y	E	F	V	T	K	D	G	R	N	A	Y	V	L	S	G	Y	A	P	G	F	G	N	V	T	V	V	A
Template Known Secondary structure												T	B		T	T	T			B	S	S														S									T	T													T	T	S											T	T
Template Predicted Secondary structure
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		108	.	110	.	.	.		.		.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.																			.
Predicted Secondary structure								.		.												.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.		.												.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	G	A	D	F	N	.	G	.	T	V	L	G	T	R	V	T	E	H	H	.	E	T	P	G	L	G	D	K	I	E	L	R	L	S	D	W	I	T	H	F	A	G	K	K	I	S	G	A	D	D	A	H	W	A	V	K	K	D	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D
Query Conservation								.		.												.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.		.												.			.	.	.	.	.	.	.	.	.	.	.	.	.										.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Sequence		C	F	I	K	T	E	D	G	F	X	L	N	S	V	R	V	I	D	Y	S	Q	E	S	.	.	.	.	.	.	.	.	.	.	.	.	.	I	Q	R	R	F	F	P	V	P	.	P	E	G	L	K	N	G	L	R	V	D	K	D	A	G	L	P	K	G	S	P	E	E	L	K	K	Q	G	I	V	K	V	S	D
Template Known Secondary structure							T	T												S				T	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	G	G	G			B		.											T	T	T	T	T	S		S	S							T	T	T					T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.														.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	Q	F	T	G	A	T	I	T	P	R	A	V	V	N	A	V	K	R	A	G	L	Y	A	Q	T
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.
Template Sequence		V	.	.	.	.	.	.	.	.	T	P	R	A	V	V	T	A	L	N	L	X	Y	R	Y	L	E	E
Template Known Secondary structure			.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.	.	.	.	.	.	.
Template SS confidence
		197									.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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