Return to main results Retrieve Phyre Job Id

Job DescriptionP00579
Confidence37.64%DateThu Jan 5 10:56:46 GMT 2012
Rank380Aligned Residues117
% Identity16%Templated3deua1
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain MarR-like transcriptional regulators
Resolution2.30

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   429430.........440.........450.........460.........470.........480.........490.........500........
Predicted Secondary structure 




















Query SS confidence 















































































Query Sequence  TYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISME
Query Conservation 


   
   
             
                     
      
 
                     

 
Alig confidence 





































........



























......
Template Conservation     
              
   


     

  
   ........    
   

  
      

  
  
 ......
Template Sequence  GSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNIHQL. . . . . . . . PPDQSQIQLAKAIGIEQPSLVRTLDQLE. . . . . .
Template Known Secondary structure  TTTTT

S........
SSTS
......
Template Predicted Secondary structure 




........







......
Template SS confidence 















































































   7..10.........20.........30.........40.... .....50.........60.........70..
 
   509510.........520.........530.........540.........550.........560...
Predicted Secondary structure 





















Query SS confidence 






















































Query Sequence  TPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRF
Query Conservation                                     
      
   
  
     
Alig confidence  ....


















































Template Conservation  ....  


 
      
  
                     
  

       
Template Sequence  . . . . DKGLISRQKRIKLTEKAEPLIAEMEEVIHKTRGEILAGISSEEIELLIKLI
Template Known Secondary structure  ....TTS


GGGTT

Template Predicted Secondary structure  ....












Template SS confidence 






















































   73......80.........90.........100.........110.........120...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions