Job Description P00579 Confidence 99.71% Date Thu Jan 5 10:56:46 GMT 2012 Rank 11 Aligned Residues 99 % Identity 56% Template d1smyf2 SCOP info DNA/RNA-binding 3-helical bundle Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma4 domain Resolution 2.70

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		509	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	I	G	D	D	E	D	S	H	L	G	D	F	I	E	D	T	T	L	E	L	P	L	D	S	A	T	T	E	S	L	R	A	A	T	H	D	V	L	A	G	L	T	A	R	E	A	K	V	L	R	M	R	F	G	I	D	M	N	T	D	Y	T	L	E	E	V	G	K	Q	F	D	V	T	R	E	R	I	R
Query Conservation
Alig confidence																																																									.	.	.	.	.
Template Conservation																																																									.	.	.	.	.
Template Sequence		T	P	I	G	D	E	K	D	S	F	Y	G	D	F	I	P	D	E	H	L	P	S	P	V	D	A	A	T	Q	S	L	L	S	E	E	L	E	K	A	L	S	K	L	S	E	R	E	A	M	V	L	K	L	R	K	.	.	.	.	.	G	L	I	D	G	E	E	V	G	A	F	F	G	V	T	R	E	R	I	R
Template Known Secondary structure			B		T	T	T	S	S		B	G	G	G	G	S			S	S	S			T																		T	T	S													.	.	.	.	.		T	T					T	T	T	S	S	S	S
Template Predicted Secondary structure																																																									.	.	.	.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.						.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		589	590	.	.	.	.	.	.	.	.	.		600	.	.	.	.	.	.	.	.	.	610	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		Q	I	E	A	K	A	L	R	K	L	R	.	H	P	S	R	S	E	V	L	R	S	F	L	D
Query Conservation													.
Alig confidence													.
Template Conservation
Template Sequence		Q	I	E	N	K	A	L	R	K	L	K	Y	H	E	S	R	T	R	K	L	R	D	F	L	D
Template Known Secondary structure																		T	T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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