Job Description P00579 Confidence 97.80% Date Thu Jan 5 10:56:46 GMT 2012 Rank 32 Aligned Residues 81 % Identity 21% Template d1or7a2 SCOP info Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors Resolution 2.00

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		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	I	G	E	A	K	A	R	R	A	K	K	E	M	V	E	A	N	L	R	L	V	I	S	I	A	K	K	Y	T	N	R	G	L	Q	F	L	D	L	I	Q	E	G	N	I	G	L	M	K	A	V	D	K	F	E	Y	R	R	G	Y	K	F	S	T	Y	A	T	W	W	I	R	Q	A	I	T	R	S	I	A
Query Conservation
Alig confidence																																				.																							.	.
Template Conservation																																				.																							.	.
Template Sequence		V	E	R	V	Q	K	G	D	Q	K	A	F	N	L	L	V	V	R	Y	Q	H	K	V	A	S	L	V	S	R	Y	V	P	S	G	.	D	V	P	D	V	V	Q	E	A	F	I	K	A	Y	R	A	L	D	S	F	R	G	.	.	D	S	A	F	Y	T	W	L	Y	R	I	A	V	N	T	A	K	N	Y	L	V
Template Known Secondary structure							T	T																					T	T	T	S		G	G	.	G																G	G	G			S	.	.	S	S
Template Predicted Secondary structure																																				.																							.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		445	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Q	A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Q	G	R
Template Known Secondary structure				T	T
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions