Phyre 2 alignment of P00579 with c3mkyP

Job Description P00579
Confidence 89.94% Date Thu Jan 5 10:56:46 GMT 2012

Rank 76 Aligned Residues 62

% Identity 16% Template c3mkyP_

PDB info PDB header:dna binding protein/dna Chain: P: PDB Molecule:protein sopb; PDBTitle: structure of sopb(155-323)-18mer dna complex, i23 form

Resolution 2.86 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	551	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.							.	.	.	.	.	.	.	600	.	.						.	.	.	.	.	.	.	610	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.											.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.											.	.	.	.	.
Query Sequence	L	T	A	R	E	A	K	V	L	R	M	R	F	G	I	D	M	N	T	D	Y	T	L	E	E	V	G	K	Q	F	D	V	T	R	E	R	I	R	Q	I	E	A	.	.	.	.	.	.	K	A	L	R	K	L	R	H	P	S	.	.	.	.	.	R	S	E	V	L	R	S	F	L	D	D
Query Conservation																																											.	.	.	.	.	.											.	.	.	.	.
Alig confidence														.																													.	.	.	.	.	.											.	.	.	.	.
Template Conservation														.
Template Sequence	T	S	A	Y	E	R	G	Q	R	Y	A	S	R	.	L	Q	N	E	F	A	G	N	I	S	A	L	A	D	A	E	N	I	S	R	K	I	I	T	R	C	I	N	T	A	K	L	P	K	S	V	V	A	L	F	S	H	P	G	E	L	S	A	R	S	G	D	A	L	Q	K	A	F	T	D
Template Known Secondary structure														.			T	T	T	T	T										T	S													T	S							T	S	S	S	G	G	G	S												T	T	T
Template Predicted Secondary structure														.
Template SS confidence
	158	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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