Job Description P00579 Confidence 69.27% Date Thu Jan 5 10:56:46 GMT 2012 Rank 200 Aligned Residues 93 % Identity 20% Template c3cuqA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex Resolution 2.61 Å

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		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.				.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure																	.	.	.
Query SS confidence																	.	.	.
Query Sequence		L	R	L	V	I	S	I	A	K	K	Y	T	N	R	G	.	.	.	L	Q	F	L	D	L	I	Q	E	G	N	I	G	L	M	K	A	V	D	K	F	E	Y	R	R	G	Y	K	F	S	T	Y	A	T	W	W	I	R	Q	A	I	T	R	S	I	A	D	Q	A	R	T	I	R	I	P	V	H	M	I	E	T	I
Query Conservation																	.	.	.
Alig confidence																	.	.	.								.	.	.	.	.	.	.	.								.									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.								.									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	E	L	H	Q	Q	V	L	K	G	R	G	K	F	A	Q	D	V	S	Q	D	D	L	I	.	.	.	.	.	.	.	.	R	A	I	K	K	L	K	.	A	L	G	T	G	F	G	I	.	.	.	.	.	.	.	.	.	.	.	I	P	V	G	G	T	Y	L	I	Q	S	V	P	A	E	L	N	M	D	H
Template Known Secondary structure												T	T	T	T			S	S								.	.	.	.	.	.	.	.							G	.	G	G	S	T	T				.	.	.	.	.	.	.	.	.	.	.				T	T							S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.								.									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.									.	.	.	.	150	.	.		.	.	.	.	.	.	.	160												.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		461	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	L	N	R	I	S	R	Q	M	L	Q	E	M	G	R	E	P	T	P	E	E	L	A	E	R	M	L	M	P	E	D	K	I	R	K	V	L	K	I	A
Query Conservation
Alig confidence									.	.	.	.	.
Template Conservation									.	.	.	.	.
Template Sequence		T	V	V	L	Q	L	A	.	.	.	.	.	E	K	N	G	Y	V	T	V	S	E	I	K	A	S	L	K	W	E	T	E	R	A	R	Q	V	L	E	H	L
Template Known Secondary structure									.	.	.	.	.	T	T	T	S												T
Template Predicted Secondary structure									.	.	.	.	.
Template SS confidence
		181	.	.	.	.	.	.						.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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