Job Description P00579 Confidence 32.59% Date Thu Jan 5 10:56:46 GMT 2012 Rank 407 Aligned Residues 91 % Identity 20% Template c2zmeB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:vacuolar protein-sorting-associated protein 36; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex Resolution 2.90 Å

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		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.		.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.		.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450			.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.																											.																											.	.
Query SS confidence																	.																											.																											.	.
Query Sequence		L	R	L	V	I	S	I	A	K	K	Y	T	N	R	G	.	L	Q	F	L	D	L	I	Q	E	G	N	I	G	L	M	K	A	V	D	K	F	E	Y	R	R	G	.	Y	K	F	S	T	Y	A	T	W	W	I	R	Q	A	I	T	R	S	I	A	D	Q	A	R	T	I	.	.	R	I	P	V	H	M	I	E	T
Query Conservation																	.																											.																											.	.
Alig confidence																	.								.	.	.	.	.	.	.	.												.							.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.
Template Conservation																									.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	T	E	V	Y	C	L	V	N	R	A	R	G	M	E	L	L	S	P	E	D	L	V	.	.	.	.	.	.	.	.	N	A	C	K	M	L	E	A	L	K	L	P	L	R	L	R	V	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	S	G	V	M	V	I	E	L	Q	S	H	K	E	E	E	M
Template Known Secondary structure														S	S	S									.	.	.	.	.	.	.	.					T	T	G	G	G	T		S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T								S	S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.									.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.															.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	K	L	N	R	I	S	R	Q	M	L	Q	E	M	G	R	E	P	T	P	E	E	L	A	E	R	M	L	M	P	E	D	K	I	R	K	V	L	K	I	A
Query Conservation
Alig confidence												.	.	.	.	.
Template Conservation												.	.	.	.	.
Template Sequence		V	A	S	A	L	E	T	V	S	E	.	.	.	.	.	K	G	S	L	T	S	E	E	F	A	K	L	V	G	M	S	V	L	L	A	K	E	R	L	L	L	A
Template Known Secondary structure												.	.	.	.	.		S		B										T
Template Predicted Secondary structure												.	.	.	.	.
Template SS confidence
		324	.	.	.	.	.	330	.	.	.						.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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