Job Description P00579 Confidence 93.28% Date Thu Jan 5 10:56:46 GMT 2012 Rank 67 Aligned Residues 252 % Identity 8% Template c2oevA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:programmed cell death 6-interacting protein; PDBTitle: crystal structure of alix/aip1 Resolution 3.30 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.																	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	D	S	D	Q	I	E	D	I	I	Q	M	I	N	D	M	G	I	Q	V	M	E	E	A	P	D	A	D	D	L	M	L	A	E	N	T	A	D	E	D	A	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	A	Q	V	L	S	S	V	E	S	E	I	G	R	T	T	D	P	V	R
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	G	I	Q	T	V	D	Q	L	I	K	E	L	P	E	L	L	Q	R	N	R	E	I	L	D	E	S	L	R	L	L	D	E	E	E	A	T	D	N	D	L	R	A	K	F	K	E	R	W	Q	R	T	P	S	N	E	L	Y	K	P	L	R	A	E	G	T	N	F	R	T	V	L	D	K	A	V	Q	A	D	G
Template Known Secondary structure		T	T																																									T	T	S	S	S	S			S							S	S
Template Predicted Secondary structure
Template SS confidence
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Y	M	R	E	M	G	T	V	E	L	L	T	R	E	G	E	I	D	I	A	K	R	I	E	D	G	I	N	Q	V	Q	C	S	V	A	E	Y	P	E	A	I	T	Y	L	L	E	Q	Y	D	R	V	E	A	E	E	A	R	L	S	D	L	I	T	G	F	V	D	P	N	A	E	E	D	L	A	P	T	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	V	K	E	C	Y	Q	S	H	R	D	T	I	V	L	L	C	K	P	E	P	E	L	N	A	A	I	P	S	A	N	P	A	K	T	M	Q	G	S	E	V	V	N	V	L	K	S	L	L	S	N	L	D	E	V	K	K	E	R	E	G	L	E	N	D	L	K	S	V	N	F	D	M	T	S	K	F	L	T	A
Template Known Secondary structure									T	T								T	S									S							S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		508	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	V	G	S	E	L	S	Q	E	D	L	D	D	D	E	D	E	D	E	E	D	G	D	D	D	S	A	D	D	D	N	S	I	D	P	E	L	A	R	E	K	F	A	E	L	R	A	Q	Y	V	V	T	R	D	T	I	K	A	K	G	R	S	H	A	T	A	Q	E	E	I	L	K	L	S	E	V	F	K	Q	F
Query Conservation
Alig confidence																																																												.	.	.	.
Template Conservation																																																												.	.	.	.
Template Sequence		L	A	Q	D	G	V	I	N	E	E	A	L	S	V	T	E	L	D	R	V	Y	G	G	L	T	T	K	V	Q	E	S	L	K	K	Q	E	G	L	L	K	N	I	Q	V	S	H	Q	E	F	S	K	M	K	Q	S	N	N	E	.	.	.	.	A	N	L	R	E	E	V	L	K	N	L	A	T	A	Y	D	N	F
Template Known Secondary structure					S	S	S															T																																S			S	S		.	.	.	.
Template Predicted Secondary structure																																																												.	.	.	.
Template SS confidence
		588	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.					.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	V	P	K	Q	F	D	Y	L	V	N	S	M	R	V	M	M	D	R	V	R	T	Q	E	R	L	I	M	K	L	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	L	V	A	N	L	K	E	G	T	K	F	Y	N	E	L	T	E	I	L	V	R	F	Q	N	K	C	S	D	I	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		664	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions