Job Description P00579 Confidence 96.87% Date Thu Jan 5 10:56:46 GMT 2012 Rank 41 Aligned Residues 87 % Identity 17% Template c2o7gA_ PDB info PDB header:transcription Chain: A: PDB Molecule:probable rna polymerase sigma-c factor; PDBTitle: crystal structure of the pribnow box recognition region of sigc from2 mycobacterium tuberculosis Resolution 2.70 Å

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		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	T	I	E	Q	V	K	D	I	N	R	R	M	S	I	G	E	A	K	A	R	R	A	K	K	E	M	V	E	A	N	L	R	L	V	I	S	I	A	K	K	Y	T	N	R	G	L	Q	F	L	D	L	I	Q	E	G	N	I	G	L	M	K	A	V	D	K	F	E	Y	R	R	G	Y	K	F	S	T	Y	A
Query Conservation
Alig confidence																								.	.	.																						.																								.	.
Template Conservation																								.	.	.																						.																								.	.
Template Sequence		A	S	D	D	E	A	V	T	A	L	A	L	S	A	A	K	G	N	G	R	A	L	.	.	.	E	A	F	I	K	A	T	Q	Q	D	V	W	R	F	V	A	Y	L	S	D	V	.	G	S	A	D	D	L	T	Q	E	T	F	L	R	A	I	G	A	I	P	R	F	S	A	.	.	R	S	S	A	R	T	W	L
Template Known Secondary structure																	T	T						.	.	.																			S			.																		G	G	G				.	.	S	S
Template Predicted Secondary structure																								.	.	.																						.																								.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.				.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70			.	.	.	.	.	.	.	.
		432	.	.	.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	W	W	I	R	Q	A	I	T	R	S	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	I	A	R	H	V	V	A	D	H	I	R
Template Known Secondary structure													T
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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