Job Description P00579 Confidence 49.38% Date Thu Jan 5 10:56:46 GMT 2012 Rank 315 Aligned Residues 54 % Identity 11% Template c2k9mA_ PDB info PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma factor rpon; PDBTitle: structure of the core binding domain of sigma54 Resolution UNK

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		540	.	.	.	.	.	.	.	.		.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.				.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.
Predicted Secondary structure											.																		.	.	.
Query SS confidence											.																		.	.	.
Query Sequence		L	R	A	A	T	H	D	V	L	.	A	G	L	T	A	R	E	A	K	V	L	R	M	R	F	G	I	.	.	.	D	M	N	T	D	Y	T	L	E	E	V	G	K	Q	F	D	V	T	R	E	R	I	R	Q	I	E	A	K
Query Conservation											.																		.	.	.
Alig confidence											.																		.	.	.
Template Conservation
Template Sequence		E	L	E	E	L	Q	Q	N	I	K	L	E	L	E	G	K	E	Q	E	L	A	L	E	L	L	N	Y	L	N	E	K	G	F	L	S	K	S	V	E	E	I	S	D	V	L	R	C	S	V	E	E	L	E	K	V	R	Q	K
Template Known Secondary structure																S										T	T	S	B		T	T	S	S	B	S	S									T	T
Template Predicted Secondary structure
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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