Job Description P00579 Confidence 23.00% Date Thu Jan 5 10:56:46 GMT 2012 Rank 478 Aligned Residues 171 % Identity 13% Template c1u5tA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:appears to be functionally related to snf7; PDBTitle: structure of the escrt-ii endosomal trafficking complex Resolution 3.60 Å

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		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.											.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		L	F	T	G	N	E	T	S	D	T	W	F	N	A	A	I	A	M	N	K	P	W	S	E	K	L	H	D	V	S	E	E	V	H	R	A	L	Q	K	L	Q	Q	I	E	E	E	T	G	L	T	I	E	Q	V	.	.	.	.	.	.	.	.	.	.	K	D	I	N	R	R	M	S	I	G	E	A	K	A	R	R
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.
Alig confidence																																																								.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	K	Q	S	V	E	L	R	D	Q	L	M	V	F	Q	E	R	L	V	E	F	A	K	K	H	N	S	E	L	Q	A	S	P	E	F	R	S	K	F	M	H	M	C	S	S	I	G	I	D	P	L	S	L	F	D	R	D	K	H	L	F	T	V	N	D	F	Y	Y	E	V	C	L	K	V	I	E	I	C	R
Template Known Secondary structure																												T	T	T	T	T	T																T							T	T	S	S	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	K	E	M	V	E	A	N	L	R	L	V	I	S	I	A	K	K	Y	T	N	R	G	L	Q	F	L	D	L	I	Q	E	G	N	I	G	L	M	K	A	V	D	K	F	E	Y	R	R	G	Y	K	F	S	T	Y	A	T	W	W	I	R	Q	A	I	T	R	S	I	A	D	Q	A	R	T	I	R	I	P	V
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	T	K	D	M	N	G	G	V	I	S	F	Q	E	L	E	K	V	H	F	R	K	L	N	V	G	L	D	D	L	E	.	.	.	.	.	.	.	.	K	S	I	D	M	L	K	S	L	E	C	F	E	I	F	Q	I	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	K	K	F	L	R	S	V	P	N
Template Known Secondary structure				T	T	T	S	S	S										T	T	T	T	T	T	T								.	.	.	.	.	.	.	.							T	T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	T	T							S	S	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.									.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.														.	.	.	.	.	.	.	160	.	.	.
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	M	I	E	T	I	N	K	L	N	R	I	S	R	Q	M	L	Q	E	M	G	R	E	P	T	P	E	E	L	A	E	R	M	L	M	P	E	D	K	I	R	K	V	L	K	I	A
Query Conservation
Alig confidence															.	.	.	.	.
Template Conservation															.	.	.	.	.
Template Sequence		E	L	T	S	D	Q	T	K	I	L	E	I	C	.	.	.	.	.	S	I	L	G	Y	S	S	I	S	L	L	K	A	N	L	G	W	E	A	V	R	S	K	S	A	L	D	E	M
Template Known Secondary structure					T	T							T	T	.	.	.	.	.	T	T	T	S			B												S
Template Predicted Secondary structure															.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.						.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions