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Job DescriptionP00579
Confidence23.44%DateThu Jan 5 10:56:46 GMT 2012
Rank473Aligned Residues279
% Identity9%Templatec1u4qB_
PDB info PDB header:structural proteinChain: B: PDB Molecule:spectrin alpha chain, brain; PDBTitle: crystal structure of repeats 15, 16 and 17 of chicken brain2 alpha spectrin
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   102.......110.........120.........130.........140.........150.........160.........170.........180.
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Query Sequence  MREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHV
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Template Sequence  VNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRD
Template Known Secondary structure  TSS
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   1698.1700.........1710.........1720.........1730.........1740.........1750.........1760.........1770.......
 
   182.......190.........200.........210.........220.........230.........240.........250.........260.
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Query Sequence  GSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRL
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Template Sequence  MDDEESWIKEKKLLVSS. . EDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVD
Template Known Secondary structure  TT
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   1778.1780.........1790.... .....1800.........1810.........1820.........1830.........1840.........1850.....
 
   262.......270.........280.........290.........300.........310.........320.........330.........340.
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Query Sequence  VPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRAL
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Template Sequence  HWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVC
Template Known Secondary structure  TS




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   1856...1860.........1870.........1880.........1890.........1900.........1910.........1920.........1930.....
 
   342.......350.. .......360.........370.........380..
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Query Sequence  QKLQQIEEETG. . . . LTIEQVKDINRRMSIGEAKARRAKKEMVEA
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Template Sequence  ANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDEN
Template Known Secondary structure  TT
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   1936...1940.........1950.........1960.........1970.........1980
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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